Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00505
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02930.1 68416.m00288 expressed protein  ; expression support...    29   2.2  
At3g43540.2 68416.m04623 expressed protein hypothetical protein ...    28   6.8  
At3g43540.1 68416.m04622 expressed protein hypothetical protein ...    28   6.8  
At3g18660.1 68416.m02370 glycogenin glucosyltransferase (glycoge...    27   9.0  
At2g20950.4 68415.m02474 expressed protein                             27   9.0  
At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putat...    27   9.0  

>At3g02930.1 68416.m00288 expressed protein  ; expression supported
           by MPSS
          Length = 806

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +2

Query: 74  SSPQSVSVDQMRQILNEIIDALESPDYASKLDEAKEA 184
           S PQSV + +  +  NE+I +LE+ + A  LD+ KEA
Sbjct: 85  SQPQSVQIKEDLKKANELIASLEN-EKAKALDQLKEA 120


>At3g43540.2 68416.m04623 expressed protein hypothetical protein
           slr1699 - Synechocystis sp. (strain PCC 6803),
           PIR:S75306
          Length = 301

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 271 NNSREGIVQFTQLIRDLESIDGEVARLHTQIR 366
           NN +E +  FT+L+  L S+ GEV +  ++ R
Sbjct: 161 NNDQEALKSFTKLVDQLPSVFGEVGQGVSEFR 192


>At3g43540.1 68416.m04622 expressed protein hypothetical protein
           slr1699 - Synechocystis sp. (strain PCC 6803),
           PIR:S75306
          Length = 373

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 271 NNSREGIVQFTQLIRDLESIDGEVARLHTQIR 366
           NN +E +  FT+L+  L S+ GEV +  ++ R
Sbjct: 233 NNDQEALKSFTKLVDQLPSVFGEVGQGVSEFR 264


>At3g18660.1 68416.m02370 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Homo sapiens [SP|P46976], Oryctolagus cuniculus
           [SP|P13280]
          Length = 655

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/52 (21%), Positives = 28/52 (53%)
 Frame = +2

Query: 527 RRNRYKLIVFALVLVYVYHFFGVGDYVQSKNFDSDFNYPLNVDIRPIVQHTR 682
           +R + +L      ++YV H+ G+  ++  +++D +FN  + V+    + H +
Sbjct: 504 KRKKTELFGAEPPVLYVLHYLGMKPWLCYRDYDCNFNSDIFVEFATDIAHRK 555


>At2g20950.4 68415.m02474 expressed protein
          Length = 530

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 488 ISRISVYLKRLIMRRNRYKLIVFALVLVYVYHFFGVGDYVQSKNFD 625
           +SR+S+Y  + + +  ++KL+ F   + Y Y    V  Y Q + F+
Sbjct: 266 LSRVSIY--QSVKKMLKFKLLWFVQPVHYKYQITSVETYEQERQFE 309


>At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putative
           similar to IAA-alanine resistance protein 1 [Arabidopsis
           thaliana] SWISS-PROT:Q9M647; contains ZIP Zinc
           transporter domain, Pfam:PF02535; identical to cDNA
           IAA-alanine resistance protein 1 mRNA GI:6942042
          Length = 469

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 265 HGAFCLHFYLHNHGEDYLHH 206
           HG  C H + H+H  D+ HH
Sbjct: 41  HGGGCSHSHDHDHDHDHDHH 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,286,717
Number of Sequences: 28952
Number of extensions: 299566
Number of successful extensions: 856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)