Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00503
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    33   0.031
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   1.5  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             27   2.7  
SPAC664.08c |||traub transciption factor family protein |Schizos...    27   2.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   3.6  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   6.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   8.3  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    25   8.3  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 33.1 bits (72), Expect = 0.031
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 406 DPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNP 507
           DPE++   QDP + A       NPA  +++  NP
Sbjct: 540 DPEVLGILQDPAMQAILGQARENPAALMEHMKNP 573


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 69  VNLKNLPTIFVNP*RLTMMIKQMSGLMKLN-QMLKNYVNTN*VPNVKKRRKSIERN 233
           +N+KN  T+ V   +L+ M+K    ++K+   +LKN  +    PN+ K R S + N
Sbjct: 27  LNIKNGETVAVKKVKLSKMLKSDLSVIKMEIDLLKNLDH----PNIVKYRGSYQTN 78


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 403 LDPEIMAAFQDPEISAAFKDVTS 471
           +DP +++A QDP++  AF+   S
Sbjct: 210 IDPSVVSAIQDPKVCKAFEKKVS 232


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 26  ARPNKFRGRAYRLLGKFEES---SHDLCESLKIDYDDQTNEWLN 148
           ++ NKF+     ++ + E S     DL E  +IDY D  N+  N
Sbjct: 284 SQSNKFKALNQSIVQQIENSMINKKDLVERTRIDYSDPNNKTFN 327


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 41  FRGRAYRLLGKFEESSHDLCESL 109
           FRGRAY L       S+D+C  L
Sbjct: 668 FRGRAYPLSSHLHHVSNDVCRGL 690


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 114 IFKDSQRSWEDSSNLPKSLYARPRNLLGRALSQFNL 7
           IF   +   E+ SN P+S++ + +      L  FNL
Sbjct: 108 IFSFDELELEERSNRPRSIFGKIKQFFNILLRSFNL 143


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 45  EGEHIGSWVNLKNLPTIFVNP 107
           + E +G+W N++ LP   +NP
Sbjct: 581 KSELLGNWTNIEYLPNSGINP 601


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 408 IKEHVIEVIQIYTSRHTTRDIRHA 337
           + EH +E + I+  R  T D RH+
Sbjct: 290 VSEHTVEKVTIFDIRINTEDPRHS 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,850
Number of Sequences: 5004
Number of extensions: 43056
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)