Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00503
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 67 9e-12
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 57 9e-09
04_03_1036 - 21895764-21895817,21895928-21895975,21896051-218961... 43 2e-04
12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551 32 0.30
12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660 32 0.30
09_04_0191 - 15467697-15467975,15468078-15468275,15468308-15468331 32 0.39
03_05_0400 - 23815408-23815589,23815706-23816020,23816203-238162... 31 0.91
01_03_0029 - 11784446-11784756,11785295-11786576 29 3.7
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 28 4.8
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 4.8
07_01_0434 - 3302926-3303072,3303402-3303545,3303644-3304293,330... 28 4.8
09_06_0104 - 20888338-20888830,20888988-20889250 28 6.4
05_02_0083 + 6450694-6450766,6451391-6451560,6451633-6451704,645... 27 8.5
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621... 27 8.5
03_01_0214 + 1694297-1694360,1694396-1694440,1694441-1694622 27 8.5
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786... 27 8.5
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 67.3 bits (157), Expect = 9e-12
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = +2
Query: 11 LNCDSARPNKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHK 187
+N DSA+ K RG AY +LGK+EE++HDL + +DYDD+ N L +V+PNA K+ +H+
Sbjct: 421 INPDSAKGYKTRGMAYAMLGKWEEAAHDLHTASNMDYDDEINAVLKKVEPNAHKIMEHR 479
Score = 54.4 bits (125), Expect = 6e-08
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +1
Query: 385 DFNDMFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPK 510
D + + DP++MAAF DPE+ AA +DV +NPA+F ++Q NPK
Sbjct: 581 DMSKILNDPDLMAAFGDPEVMAALQDVMNNPASFARHQANPK 622
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 57.2 bits (132), Expect = 9e-09
Identities = 25/60 (41%), Positives = 41/60 (68%)
Frame = +2
Query: 8 RLNCDSARPNKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHK 187
++N DSA+ K RG A +LGK+EE++ DL + K+DYD++ L +V+PN K+ +H+
Sbjct: 541 KINPDSAKGYKSRGMAKAMLGKWEEAAQDLRMAAKLDYDEEIGAELKKVEPNVLKIEEHR 600
>04_03_1036 -
21895764-21895817,21895928-21895975,21896051-21896154,
21896624-21896721,21897838-21897916,21898039-21898102,
21898176-21898294,21898434-21898686,21899273-21899279,
21899956-21900013,21900300-21900353,21900863-21901055
Length = 376
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 406 DPEIMAAFQDPEISAAFKDVTSNPANFIKYQNN 504
+PE+ AFQ+P+I A D + NP N +KYQN+
Sbjct: 325 NPEVAVAFQNPKIQTAIMDCSQNPLNIVKYQND 357
>12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551
Length = 475
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -1
Query: 324 GEIPGCCTSCSIGLGLSSTCSCFRALRALRNFSLC-SFSSFL 202
G I G T SIG+G+SST +R+L+A + + SFS+ L
Sbjct: 219 GGIQGSLTGISIGVGVSSTQKVWRSLQAFGDIAFAYSFSNIL 260
>12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660
Length = 475
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -1
Query: 324 GEIPGCCTSCSIGLGLSSTCSCFRALRALRNFSLC-SFSSFL 202
G I G T SIG+G+SST +R+L+A + + SFS+ L
Sbjct: 219 GGIQGSLTGISIGVGVSSTQKVWRSLQAFGDIAFAYSFSNIL 260
>09_04_0191 - 15467697-15467975,15468078-15468275,15468308-15468331
Length = 166
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -1
Query: 324 GEIPGCCTSCSIGLGLSSTCSCFRALRALRNFSLC-SFSSFL 202
G I G T SIG+G+SST +R+L+A + + SFS+ L
Sbjct: 29 GGIHGSLTGISIGVGVSSTQKVWRSLQAFGDIAFAYSFSNIL 70
>03_05_0400 -
23815408-23815589,23815706-23816020,23816203-23816277,
23816377-23816530
Length = 241
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 315 PGCCTSCSIGLGLSSTCSCFRALRA-LRNFSLCSFSSFLRWA 193
P CC + ++ + LSS C C A R+ LRN SL +F+ +A
Sbjct: 117 PNCCQAVTVTVDLSS-CLCMVASRSSLRNSSLSAFTILALYA 157
>01_03_0029 - 11784446-11784756,11785295-11786576
Length = 530
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Frame = +3
Query: 240 EPVKHGSKSTCCSGPSQCCS---WCNTRGFPRLPW 335
E V GS S P CS W + R PRLPW
Sbjct: 4 EVVSAGSPLKASSSPPPLCSFGIWSDQRKSPRLPW 38
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 354 RDIRHASREAGEIPGCCTSCSIGLGLSSTCSCFR 253
R A+ +AG PGC I LSS+ SC R
Sbjct: 262 RSASDAAADAGASPGCFRRIKIWSSLSSSSSCSR 295
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 65 LGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAE 169
L KFE+ HD+ ++ I + ++ +W E+ E
Sbjct: 585 LNKFEDKVHDIQDNPSISFSERQKKWKEELDQELE 619
>07_01_0434 -
3302926-3303072,3303402-3303545,3303644-3304293,
3304410-3304493,3304651-3304703,3305127-3305197,
3305285-3305362,3305775-3305903,3305988-3306044,
3306693-3306923,3307748-3307882,3308609-3308684,
3308768-3309024,3309095-3309202,3309328-3309526,
3309600-3309604
Length = 807
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 44 RGRAYRLLGKFEESSHDLCESLKIDYDDQT 133
RG+AY+ LG E + DL ++ ++ DD+T
Sbjct: 414 RGQAYKELGNLEAAVGDLSKAHELSPDDET 443
>09_06_0104 - 20888338-20888830,20888988-20889250
Length = 251
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 312 GCCTSCSIGLGLSSTCSC 259
G C SCS+GL S+ C C
Sbjct: 215 GVCFSCSLGLPKSTDCKC 232
>05_02_0083 +
6450694-6450766,6451391-6451560,6451633-6451704,
6451893-6452043,6452709-6452817,6452906-6453023,
6453214-6453361,6453520-6453768,6454209-6454334,
6454474-6454574,6454728-6454802,6455160-6455219
Length = 483
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 44 RGRAYRLLGKFEESSHDLCESLKIDYDD-QTNEWLNEVKPNAEKLR 178
RG AY +GKF+E+ D + +I +D L E + +K+R
Sbjct: 86 RGAAYLAMGKFKEALKDFQQVKRISPNDPDATRKLKECEKAVQKIR 131
>04_01_0476 +
6215401-6217445,6217538-6217630,6218031-6218133,
6218237-6218254
Length = 752
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 360 TTRDIRHASREAGEIPGCCTSCSIGLGLSSTCSCFRALRALRNFSLC 220
TT I +S AG C +S S LSS + R++RAL+ F C
Sbjct: 115 TTNSI--SSAIAGSSSSCSSSSSSITTLSSDSTVKRSVRALKRFLFC 159
>03_01_0214 + 1694297-1694360,1694396-1694440,1694441-1694622
Length = 96
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 225 ERNYAEPVKHGSKSTCCSGPSQCCSWCNTRGFP 323
E E H K C + C S CNT GFP
Sbjct: 47 EARTCESQSHRFKGPCAR-KANCASVCNTEGFP 78
>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
28679221-28679265,28679523-28679594,28679721-28679759,
28679966-28680061,28680492-28680566,28681717-28681764,
28681888-28681971,28682141-28682341,28682394-28682561,
28683232-28683372,28683470-28683517,28683845-28684087,
28684184-28684297,28685134-28685163,28685361-28685951,
28686033-28686620,28686744-28686863,28687764-28687938,
28688397-28688562,28688653-28688755,28689227-28689319,
28690759-28690918,28691754-28691872
Length = 1275
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 278 RPKPMLQLVQHPGISPASLEACLMSXXXXXXXXIWMTSMTCSLIQKLWQ 424
RP + L G SP ++ L+S W+T+ CSL +K+ Q
Sbjct: 963 RPILLQHLFNVYGRSPKVVKQVLLSTSKVLNFDYWITTTVCSLRRKIMQ 1011
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,624
Number of Sequences: 37544
Number of extensions: 275987
Number of successful extensions: 821
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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