Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00503
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 67   9e-12
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)                      31   0.93 
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   2.7  
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)      29   2.8  
SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)                 28   5.0  
SB_15761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)                 28   6.6  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     28   6.6  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 28/60 (46%), Positives = 43/60 (71%)
 Frame = +2

Query: 8   RLNCDSARPNKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHK 187
           ++N DSA+  K+RGRA+  LG +E++  DL ++LK+D+D+Q NEW  +V P  EK R+ K
Sbjct: 110 QINPDSAQIYKWRGRAHEFLGHWEKADKDLAQALKLDFDEQVNEWFKDVHPKEEKERKRK 169



 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 28/42 (66%), Positives = 32/42 (76%)
 Frame = +1

Query: 385 DFNDMFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPK 510
           D N +  DPE+M AFQDPE+ AAF+DV  NPAN  KYQNNPK
Sbjct: 228 DINTILNDPEVMQAFQDPEVMAAFQDVNQNPANMAKYQNNPK 269


>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
          Length = 992

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 26/120 (21%), Positives = 44/120 (36%)
 Frame = +3

Query: 24  AHVLTNSEGEHIGSWVNLKNLPTIFVNP*RLTMMIKQMSGLMKLNQMLKNYVNTN*VPNV 203
           AH++   +G     W +++     + N     + +++M   +    +L+   N      V
Sbjct: 532 AHLIQYKDGVRRSQWYHIRAFVLAYTN-----IALRRMLRRIPREDVLRVCTNAIYAKAV 586

Query: 204 KKRRKSIERNYAEPVKHGSKSTCCSGPSQCCSWCNTRGFPRLPWRHA*CPWWYACWCKSG 383
               K +ERN   P      +    G +Q   WC  RG     WR A    W     +SG
Sbjct: 587 PSGVKLVERNPRRPPSVPQNAIYAKGGAQ---WCKARGAKSEVWRVAPQEAWVRVATQSG 643


>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 25.4 bits (53), Expect(2) = 2.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 272 LLRPKPMLQLVQHPGISPASLEA 340
           L +P+  LQ ++HPGI+ A   A
Sbjct: 77  LTQPEDALQYIKHPGITEAQSSA 99



 Score = 22.2 bits (45), Expect(2) = 2.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 119 YDDQTNEWLNEVKPN 163
           + +Q  EWL  V+PN
Sbjct: 36  WPEQAMEWLERVRPN 50


>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
          Length = 851

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 462 IFECCRYFRILECCHNFWIKEHVIEVIQIY-TSRHTTRDIRHAS 334
           +F+ CR   IL+  +NF + E  +E +  Y +S+    D+R+ S
Sbjct: 195 VFKSCRKLEILDLSYNFNLNEDCLETLAQYSSSKLRYLDLRNCS 238


>SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)
          Length = 635

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +3

Query: 111 RLTMMIKQMSGLMKLNQMLKNYVNTN*VPNVKKRRKSIERNYAEPVKHGSKSTCCSGPSQ 290
           RL +MIK M    +  + + N  N+     +K   + + +NY + VK  +    CS PS 
Sbjct: 184 RLNIMIKSMKACKREIKSVLNTGNSTVGLFLKSNFEYLRQNYRKSVKLLNSVQKCSNPSL 243

Query: 291 CCSWC-NTRGFPRLPWRH 341
               C NT  F  L   H
Sbjct: 244 ETGQCINTMYFNNLGCIH 261


>SB_15761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 381 QIYTSRHTTRDIRHASREAGEIPGCCTSCSIGL 283
           Q+  SRH   DI  ++REAG    C  S  +GL
Sbjct: 177 QLAGSRHPKHDITESAREAGSRNRCPCSSHMGL 209


>SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)
          Length = 484

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 221 ALSPLFYVGHLICVDVIF 168
           AL PL YVG+ +C+ V+F
Sbjct: 222 ALPPLRYVGYSVCISVLF 239


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 386 TSMTCSLIQKLWQHSRILKYLQHSKMLQVIQQI 484
           T +  S +QKL++  RI+K+L H  ++++ + I
Sbjct: 117 TQLNPSSLQKLFREVRIMKFLDHPNIVKLYEVI 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,968,450
Number of Sequences: 59808
Number of extensions: 326439
Number of successful extensions: 930
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)