Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00503
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    74   9e-14
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    74   9e-14
Z81595-8|CAB54305.1|  345|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81595-7|CAB54304.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U55370-9|AAO21423.1|   99|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AL032626-16|CAA21542.1|  101|Caenorhabditis elegans Hypothetical...    28   5.7  
Z98262-3|CAD44156.1|  454|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z98262-1|CAB10932.1|  502|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z71260-4|CAD44116.1|  454|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z71260-2|CAA95799.1|  502|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern...    27   7.5  
AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 32/58 (55%), Positives = 44/58 (75%)
 Frame = +2

Query: 11  LNCDSARPNKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQH 184
           +N DSA+  KFRGRA RLLGK+ E+  DL  + K+DYD+  NEWL EV+PNA K++++
Sbjct: 178 INPDSAQGYKFRGRANRLLGKWVEAKTDLATACKLDYDEAANEWLKEVEPNAHKIQEY 235



 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 23/38 (60%), Positives = 27/38 (71%)
 Frame = +1

Query: 397 MFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPK 510
           +F DPEI AA QDPE+  A  D+  NPAN +KY NNPK
Sbjct: 323 LFSDPEIAAAIQDPEVLPALMDIMQNPANMMKYINNPK 360


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 32/58 (55%), Positives = 44/58 (75%)
 Frame = +2

Query: 11  LNCDSARPNKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQH 184
           +N DSA+  KFRGRA RLLGK+ E+  DL  + K+DYD+  NEWL EV+PNA K++++
Sbjct: 178 INPDSAQGYKFRGRANRLLGKWVEAKTDLATACKLDYDEAANEWLKEVEPNAHKIQEY 235



 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 23/38 (60%), Positives = 27/38 (71%)
 Frame = +1

Query: 397 MFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPK 510
           +F DPEI AA QDPE+  A  D+  NPAN +KY NNPK
Sbjct: 323 LFSDPEIAAAIQDPEVLPALMDIMQNPANMMKYINNPK 360


>Z81595-8|CAB54305.1|  345|Caenorhabditis elegans Hypothetical
           protein T22H2.6b protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 192 VPNVKKR--RKSIERNYAEPVKHGSKSTCCSGPSQCC 296
           VP  KK+  RK++ERN    V    K++ C   S CC
Sbjct: 157 VPMKKKKPARKTVERNQFNEVVCPDKASKCPDGSTCC 193


>Z81595-7|CAB54304.1|  358|Caenorhabditis elegans Hypothetical
           protein T22H2.6a protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 192 VPNVKKR--RKSIERNYAEPVKHGSKSTCCSGPSQCC 296
           VP  KK+  RK++ERN    V    K++ C   S CC
Sbjct: 157 VPMKKKKPARKTVERNQFNEVVCPDKASKCPDGSTCC 193


>U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical
           protein C46A5.2 protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 17  CDSARPN--KFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLN 148
           CD  +P     RGR +RL+  + ++  D    L I +++ T+  LN
Sbjct: 254 CDIFQPTYAMLRGRCFRLIDSYYQNDTDEVAKLSIFFNNMTSPILN 299


>U55370-9|AAO21423.1|   99|Caenorhabditis elegans Hypothetical
           protein K03B4.7b protein.
          Length = 99

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 405 KEHVIEVIQIYTSRHTTRDIRHASREAGEIPGCCTSCSIGLGLSST 268
           ++ V+   Q+   R TTRD   +S ++ E     T+ ++  GLS +
Sbjct: 21  RDEVVPEEQLLAVRRTTRDASDSSSDSDEKDDAKTTVTVSFGLSGS 66


>AL032626-16|CAA21542.1|  101|Caenorhabditis elegans Hypothetical
           protein Y37D8A.19 protein.
          Length = 101

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 339 ASREAGEIPGCCTSCSIGLGLSS 271
           AS  A   PGCC S ++  GLS+
Sbjct: 58  ASNPAERCPGCCASVALAAGLSA 80


>Z98262-3|CAD44156.1|  454|Caenorhabditis elegans Hypothetical
           protein F15C11.2c protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 394 DMFLDPEIMAAFQDPEISAAFKDV 465
           +M  DP +M A ++P +S AF+ +
Sbjct: 367 NMMSDPSVMEAMRNPRVSEAFRQI 390


>Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 394 DMFLDPEIMAAFQDPEISAAFKDV 465
           +M  DP +M A ++P +S AF+ +
Sbjct: 349 NMMSDPSVMEAMRNPRVSEAFRQI 372


>Z98262-1|CAB10932.1|  502|Caenorhabditis elegans Hypothetical
           protein F15C11.2a protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 394 DMFLDPEIMAAFQDPEISAAFKDV 465
           +M  DP +M A ++P +S AF+ +
Sbjct: 367 NMMSDPSVMEAMRNPRVSEAFRQI 390


>Z71260-4|CAD44116.1|  454|Caenorhabditis elegans Hypothetical
           protein F15C11.2c protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 394 DMFLDPEIMAAFQDPEISAAFKDV 465
           +M  DP +M A ++P +S AF+ +
Sbjct: 367 NMMSDPSVMEAMRNPRVSEAFRQI 390


>Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 394 DMFLDPEIMAAFQDPEISAAFKDV 465
           +M  DP +M A ++P +S AF+ +
Sbjct: 349 NMMSDPSVMEAMRNPRVSEAFRQI 372


>Z71260-2|CAA95799.1|  502|Caenorhabditis elegans Hypothetical
           protein F15C11.2a protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 394 DMFLDPEIMAAFQDPEISAAFKDV 465
           +M  DP +M A ++P +S AF+ +
Sbjct: 367 NMMSDPSVMEAMRNPRVSEAFRQI 390


>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
           (werner's syndrome) relatedprotein 1 protein.
          Length = 1056

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 382 DDFNDMFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPK 510
           D  ND F+DPE M +  D +++   K    +   F   +N P+
Sbjct: 154 DTLNDSFVDPEFMDSVLDNQLTIKGKKQFLDDGEFFTDRNVPQ 196


>AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical
           protein C01B12.5 protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = -1

Query: 105 DSQRSWEDSSNLPKSLYARPRNLLGRALSQF 13
           ++ R+  ++S LP+ ++ +PRN +  A+++F
Sbjct: 399 ENTRTQSNASMLPRHMWQQPRNKISAAIAKF 429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,490
Number of Sequences: 27780
Number of extensions: 248050
Number of successful extensions: 815
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)