Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00503
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.0  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 430 QDPEISAAFKDVTSNPANFIKYQNNPKXXXXXXNYKRNL 546
           ++P+I ++  + T +  N  KY  N K      NY + L
Sbjct: 77  REPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKL 115


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 131 FDHHSQSLRIHKDRGKI 81
           FD    +LRIH+ RG +
Sbjct: 298 FDEERLTLRIHRGRGSV 314


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 5/8 (62%), Positives = 5/8 (62%)
 Frame = +3

Query: 348 CPWWYACW 371
           C WW  CW
Sbjct: 488 CCWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 5/8 (62%), Positives = 5/8 (62%)
 Frame = +3

Query: 348 CPWWYACW 371
           C WW  CW
Sbjct: 541 CCWWKICW 548


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 363 HTTRDIRHASREAGEIPGCCTSCS 292
           H+ +  RH     GE P  CT CS
Sbjct: 159 HSGKLHRHMRIHTGERPHKCTVCS 182


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 467 VTSLNAADISGSWNAAI 417
           +TS+ ++++S SW+A I
Sbjct: 427 ITSVKSSELSISWDAPI 443


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 120 MMIKQMSGLMKLNQMLKNYV 179
           MMI   SG+ ++ Q+L+ ++
Sbjct: 63  MMISPASGIHQMQQLLQQHI 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,641
Number of Sequences: 438
Number of extensions: 3098
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)