Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00503
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi...    58   6e-09
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te...    57   1e-08
At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family...    40   0.001
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr...    32   0.33 
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi...    31   0.43 
At1g62740.1 68414.m07081 stress-inducible protein, putative simi...    30   1.3  
At3g52240.1 68416.m05741 expressed protein                             29   3.1  
At1g12270.1 68414.m01419 stress-inducible protein, putative simi...    29   3.1  
At1g07560.1 68414.m00809 leucine-rich repeat protein kinase, put...    29   3.1  
At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   4.1  
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    28   5.4  
At4g21390.1 68417.m03090 S-locus lectin protein kinase family pr...    27   7.1  
At2g29640.1 68415.m03601 josephin family protein contains Pfam d...    27   9.4  

>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
           protein similar to Hsc70-interacting protein (Hip) from
           {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
           contains Pfam profile PF00515: tetratricopeptide repeat
           (TPR) domain
          Length = 441

 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +1

Query: 385 DFNDMFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPK 510
           DF+ +  DPE+M AF DPE+ AA +DV  NPAN  K+Q NPK
Sbjct: 384 DFSKILNDPELMTAFSDPEVMAALQDVMKNPANLAKHQANPK 425



 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 25/59 (42%), Positives = 40/59 (67%)
 Frame = +2

Query: 11  LNCDSARPNKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHK 187
           +N DSA+  K RG A  +LG++ E++ DL  +  IDYD++ +  L +V+PNA KL +H+
Sbjct: 186 INPDSAKGYKSRGMARAMLGEWAEAAKDLHLASTIDYDEEISAVLKKVEPNAHKLEEHR 244


>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
           tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
           similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
           sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
           profile: PF00085 Thioredoxin
          Length = 380

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/60 (40%), Positives = 42/60 (70%)
 Frame = +2

Query: 8   RLNCDSARPNKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHK 187
           + N DSA+  K RG A  +LG++EE++ DL  + K+DYD++    L +V+PNA+++ +H+
Sbjct: 174 QFNSDSAKGYKSRGMAKAMLGQWEEAAADLHVASKLDYDEEIGTMLKKVEPNAKRIEEHR 233


>At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family
           protein contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 447

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +1

Query: 406 DPEIMAAFQDPEISAAFKDVTSNPANFIKYQNN 504
           +P++  AFQ+P + AA  + + NP N +KYQN+
Sbjct: 396 NPDVAMAFQNPRVQAALMECSENPMNIMKYQND 428


>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
           protein kinase family protein contains leucine
           rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat transmembrane protein kinase 2 [Zea mays]
           gi|3360291|gb|AAC27895
          Length = 768

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -2

Query: 506 GLF*YLMKFAGLLVTSLNAADISGSWNAAIISGSRNMSLKSSRFT 372
           GL   L  F+ + V   ++  ISG+   A+ S  RN+SL S+RFT
Sbjct: 84  GLSDTLADFSSIQVMDFSSNHISGTIPQALPSSIRNLSLSSNRFT 128


>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 554

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +2

Query: 44  RGRAYRLLGKFEESSHDLCESLKIDYDDQT-NEWLNEVK 157
           RG+AYR LG FE++  DL ++ ++  +D+T  + L +VK
Sbjct: 186 RGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVK 224


>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 571

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 406 DPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNP 507
           DPEI     DP +     D+  NPA   K+  NP
Sbjct: 520 DPEIQNILTDPVMRQVLSDLQENPAAAQKHMQNP 553


>At3g52240.1 68416.m05741 expressed protein
          Length = 680

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 228 RNYAEPVKHGSKSTCCSGPSQCCSWCNTR 314
           R   E + HGS     + P +CC+ C +R
Sbjct: 314 RESFETLSHGSPDNSVTSPDKCCNSCGSR 342


>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 572

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 406 DPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNP 507
           DPEI     DP +     D+  NP+   K+  NP
Sbjct: 521 DPEIQNILTDPVMRQVLSDLQENPSAAQKHMQNP 554


>At1g07560.1 68414.m00809 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 856

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -2

Query: 539 RL*FSYNSSNLGLF*YLMKFAGLLVTSLNAADISGSWNAAIISGSRNMSLKSSR 378
           +L FS N+   G+  +L K   LLV +L+  ++SGS   A+++  +N S    +
Sbjct: 440 KLDFSNNNLTGGVPEFLAKMKSLLVINLSGNNLSGSVPQALLNKVKNGSCNKKK 493


>At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam domain PF03171 2OG-Fe(II)
           oxygenase superfamily
          Length = 394

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 249 KHGSKSTCCSGPSQCCSWCNTRGFPRLPWRHA-*CPWWYACWCK 377
           +HG+++T C        WC +  F  L   H     W   C+C+
Sbjct: 327 RHGARATTCGHRVNMLLWCRSSVFRELKTHHKDFSSWCGECFCE 370


>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 71  KFEESSHDLCESLKIDYDDQTNEWLNEVKP 160
           K EE   D  E +KIDYD   NE  +E  P
Sbjct: 493 KLEEGDGD--EEMKIDYDSDMNEEKDEANP 520


>At4g21390.1 68417.m03090 S-locus lectin protein kinase family
           protein contains Pfam profiles: PF00954 S-locus
           glycoprotein family, PF00069 protein kinase domain,
           PF01453 lectin (probable mannose binding)
          Length = 849

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 440 SGSWNAAIISGSRNMSL 390
           SG WN+AI +G  NMSL
Sbjct: 217 SGQWNSAIFTGIPNMSL 233


>At2g29640.1 68415.m03601 josephin family protein contains Pfam
           domain PF02099: Josephin; similar to Josephin-like
           protein (Swiss-Prot:O82391) [Arabidopsis thaliana]
          Length = 360

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 315 PGCCTSCSIGLGLSSTCSCFRALRAL 238
           PGC TSC + L   + C+  R ++ L
Sbjct: 260 PGCTTSCGLRLPRKTECTAARLIKDL 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,718,533
Number of Sequences: 28952
Number of extensions: 226958
Number of successful extensions: 746
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)