Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00502
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 66 3e-11
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 56 3e-08
04_03_1036 - 21895764-21895817,21895928-21895975,21896051-218961... 44 9e-05
03_01_0214 + 1694297-1694360,1694396-1694440,1694441-1694622 30 1.6
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 30 2.2
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.2
07_01_0434 - 3302926-3303072,3303402-3303545,3303644-3304293,330... 29 3.8
05_02_0083 + 6450694-6450766,6451391-6451560,6451633-6451704,645... 29 5.0
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 6.6
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 28 8.7
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 66.1 bits (154), Expect = 3e-11
Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = +2
Query: 11 LNCDSAP-YKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHK 184
+N DSA YK RG AY +LGK+EE++HDL + +DYDD+ N L +V+PNA K+ +H+
Sbjct: 421 INPDSAKGYKTRGMAYAMLGKWEEAAHDLHTASNMDYDDEINAVLKKVEPNAHKIMEHR 479
Score = 54.8 bits (126), Expect = 7e-08
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +1
Query: 382 DFNDMFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKM 510
D + + DP++MAAF DPE+ AA +DV +NPA+F ++Q NPK+
Sbjct: 581 DMSKILNDPDLMAAFGDPEVMAALQDVMNNPASFARHQANPKV 623
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +2
Query: 8 RLNCDSAP-YKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHK 184
++N DSA YK RG A +LGK+EE++ DL + K+DYD++ L +V+PN K+ +H+
Sbjct: 541 KINPDSAKGYKSRGMAKAMLGKWEEAAQDLRMAAKLDYDEEIGAELKKVEPNVLKIEEHR 600
>04_03_1036 -
21895764-21895817,21895928-21895975,21896051-21896154,
21896624-21896721,21897838-21897916,21898039-21898102,
21898176-21898294,21898434-21898686,21899273-21899279,
21899956-21900013,21900300-21900353,21900863-21901055
Length = 376
Score = 44.4 bits (100), Expect = 9e-05
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +1
Query: 403 DPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKML 513
+PE+ AFQ+P+I A D + NP N +KYQN+ +++
Sbjct: 325 NPEVAVAFQNPKIQTAIMDCSQNPLNIVKYQNDKEVM 361
>03_01_0214 + 1694297-1694360,1694396-1694440,1694441-1694622
Length = 96
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 222 ERNYAEPVKHRSKSTCCSGPSQCCSWCNTRGFP 320
E E HR K C + C S CNT GFP
Sbjct: 47 EARTCESQSHRFKGPCAR-KANCASVCNTEGFP 78
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 192 PNVKKRRKSIERNYAEPVKHRSKSTCCS 275
P + KS E N EP+ HR ST C+
Sbjct: 188 PYILSLNKSAEENRVEPIYHRLNSTACN 215
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 403 DPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKML 513
DP A + P+ +DV NP++ Y ++P+M+
Sbjct: 148 DPTTRAYLEQPDFMQMLRDVQRNPSSLNMYLSDPRMM 184
>07_01_0434 -
3302926-3303072,3303402-3303545,3303644-3304293,
3304410-3304493,3304651-3304703,3305127-3305197,
3305285-3305362,3305775-3305903,3305988-3306044,
3306693-3306923,3307748-3307882,3308609-3308684,
3308768-3309024,3309095-3309202,3309328-3309526,
3309600-3309604
Length = 807
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 32 YKFRGRAYRLLGKFEESSHDLCESLKIDYDDQT 130
Y RG+AY+ LG E + DL ++ ++ DD+T
Sbjct: 411 YYRRGQAYKELGNLEAAVGDLSKAHELSPDDET 443
>05_02_0083 +
6450694-6450766,6451391-6451560,6451633-6451704,
6451893-6452043,6452709-6452817,6452906-6453023,
6453214-6453361,6453520-6453768,6454209-6454334,
6454474-6454574,6454728-6454802,6455160-6455219
Length = 483
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 23 SAPYKFRGRAYRLLGKFEESSHDLCESLKIDYDD-QTNEWLNEVKPNAEKLR 175
S Y RG AY +GKF+E+ D + +I +D L E + +K+R
Sbjct: 80 SKGYYRRGAAYLAMGKFKEALKDFQQVKRISPNDPDATRKLKECEKAVQKIR 131
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 62 LGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAE 166
L KFE+ HD+ ++ I + ++ +W E+ E
Sbjct: 585 LNKFEDKVHDIQDNPSISFSERQKKWKEELDQELE 619
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 394 MFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKML 513
M DP P+ +DV NP++ Y ++P+M+
Sbjct: 304 MAADPTTRPYLDQPDFMRMLRDVQRNPSSLNNYLSDPRMV 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,501,596
Number of Sequences: 37544
Number of extensions: 299209
Number of successful extensions: 858
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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