Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00502
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 68   9e-12
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   3.5  
SB_49681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)                 29   3.8  
SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)                29   3.8  
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)      29   3.8  
SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)                 28   8.9  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     28   8.9  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 28/43 (65%), Positives = 33/43 (76%)
 Frame = +1

Query: 382 DFNDMFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKM 510
           D N +  DPE+M AFQDPE+ AAF+DV  NPAN  KYQNNPK+
Sbjct: 228 DINTILNDPEVMQAFQDPEVMAAFQDVNQNPANMAKYQNNPKI 270



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 29/60 (48%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
 Frame = +2

Query: 8   RLNCDSAP-YKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHK 184
           ++N DSA  YK+RGRA+  LG +E++  DL ++LK+D+D+Q NEW  +V P  EK R+ K
Sbjct: 110 QINPDSAQIYKWRGRAHEFLGHWEKADKDLAQALKLDFDEQVNEWFKDVHPKEEKERKRK 169


>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 25.4 bits (53), Expect(2) = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 269 LLRPKPMLQLVQHPGISPASLEA 337
           L +P+  LQ ++HPGI+ A   A
Sbjct: 77  LTQPEDALQYIKHPGITEAQSSA 99



 Score = 22.2 bits (45), Expect(2) = 3.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 116 YDDQTNEWLNEVKPN 160
           + +Q  EWL  V+PN
Sbjct: 36  WPEQAMEWLERVRPN 50


>SB_49681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 251 QEQEHVLLRPKPMLQLVQH-PGISPASL 331
           QE+E  LL+P+P L  V   PG++PA L
Sbjct: 14  QEEEKRLLQPEPKLMTVSDTPGVTPACL 41


>SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)
          Length = 635

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +3

Query: 108 RLTMMIKQMSGLMKLNQMLKNYVNTN*VPNVKKRRKSIERNYAEPVKHRSKSTCCSGPSQ 287
           RL +MIK M    +  + + N  N+     +K   + + +NY + VK  +    CS PS 
Sbjct: 184 RLNIMIKSMKACKREIKSVLNTGNSTVGLFLKSNFEYLRQNYRKSVKLLNSVQKCSNPSL 243

Query: 288 CCSWC-NTRGFPRLPWRH 338
               C NT  F  L   H
Sbjct: 244 ETGQCINTMYFNNLGCIH 261


>SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)
          Length = 996

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 27  HPTNSEGEHIGS-WVNLKNLPTIFVNP*RLTMMIKQMSGLMKLNQMLKNY 173
           HP +  G   G  W ++    TI ++   LT   K+MSGL K + M++++
Sbjct: 619 HPVSRSGHPFGQVWTDMAFEQTINLDSKSLTSATKRMSGLEKESGMVEHH 668


>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
          Length = 851

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 459 IFECCRYFRILECCHNFWIKEHVIEVIQIY-TSRHTTRDIRHAS 331
           +F+ CR   IL+  +NF + E  +E +  Y +S+    D+R+ S
Sbjct: 195 VFKSCRKLEILDLSYNFNLNEDCLETLAQYSSSKLRYLDLRNCS 238


>SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)
          Length = 484

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 218 ALSPLFYVGHLICVDVIF 165
           AL PL YVG+ +C+ V+F
Sbjct: 222 ALPPLRYVGYSVCISVLF 239


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 383 TSMTCSLIQKLWQHSRILKYLQHSKMLQVIQQI 481
           T +  S +QKL++  RI+K+L H  ++++ + I
Sbjct: 117 TQLNPSSLQKLFREVRIMKFLDHPNIVKLYEVI 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,342,764
Number of Sequences: 59808
Number of extensions: 352365
Number of successful extensions: 984
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)