Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00502
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 58 6e-09
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 56 2e-08
At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family... 41 7e-04
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 32 0.45
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi... 31 0.59
At1g62740.1 68414.m07081 stress-inducible protein, putative simi... 31 1.0
At2g02100.1 68415.m00146 plant defensin-fusion protein, putative... 29 2.4
At1g12270.1 68414.m01419 stress-inducible protein, putative simi... 29 2.4
At5g03690.2 68418.m00329 fructose-bisphosphate aldolase, putativ... 28 5.5
At5g03690.1 68418.m00328 fructose-bisphosphate aldolase, putativ... 28 5.5
At1g07560.1 68414.m00809 leucine-rich repeat protein kinase, put... 28 5.5
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot... 28 7.2
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea... 28 7.2
At4g21390.1 68417.m03090 S-locus lectin protein kinase family pr... 27 9.6
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 58.0 bits (134), Expect = 6e-09
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +1
Query: 382 DFNDMFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKM 510
DF+ + DPE+M AF DPE+ AA +DV NPAN K+Q NPK+
Sbjct: 384 DFSKILNDPELMTAFSDPEVMAALQDVMKNPANLAKHQANPKV 426
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = +2
Query: 11 LNCDSAP-YKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHK 184
+N DSA YK RG A +LG++ E++ DL + IDYD++ + L +V+PNA KL +H+
Sbjct: 186 INPDSAKGYKSRGMARAMLGEWAEAAKDLHLASTIDYDEEISAVLKKVEPNAHKLEEHR 244
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +2
Query: 8 RLNCDSAP-YKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHK 184
+ N DSA YK RG A +LG++EE++ DL + K+DYD++ L +V+PNA+++ +H+
Sbjct: 174 QFNSDSAKGYKSRGMAKAMLGQWEEAAADLHVASKLDYDEEIGTMLKKVEPNAKRIEEHR 233
Query: 185 LSAQ 196
Q
Sbjct: 234 RKYQ 237
>At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family
protein contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 447
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +1
Query: 403 DPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKML 513
+P++ AFQ+P + AA + + NP N +KYQN+ +++
Sbjct: 396 NPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVM 432
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 503 GLF*YLMKFAGLLVTSLNAADISGSWNAAIISGSRNMSLKSSRFT 369
GL L F+ + V ++ ISG+ A+ S RN+SL S+RFT
Sbjct: 84 GLSDTLADFSSIQVMDFSSNHISGTIPQALPSSIRNLSLSSNRFT 128
>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 554
Score = 31.5 bits (68), Expect = 0.59
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +2
Query: 41 RGRAYRLLGKFEESSHDLCESLKIDYDDQT-NEWLNEVK 154
RG+AYR LG FE++ DL ++ ++ +D+T + L +VK
Sbjct: 186 RGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVK 224
>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 571
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 403 DPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKML 513
DPEI DP + D+ NPA K+ NP ++
Sbjct: 520 DPEIQNILTDPVMRQVLSDLQENPAAAQKHMQNPMIM 556
>At2g02100.1 68415.m00146 plant defensin-fusion protein, putative
(PDF2.2) plant defensin protein family member, personal
communication, Bart Thomma
(Bart.Thomma@agr.kuleuven.ac.be); similar to
SWISS-PROT:O65740
Length = 77
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 216 SIERNYAEPVKHRSKSTCCSGPSQCCSWCNTRGF 317
++E E HR K TC S S C + C+ GF
Sbjct: 27 TVEARTCESQSHRFKGTCVSA-SNCANVCHNEGF 59
>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 572
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 403 DPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKML 513
DPEI DP + D+ NP+ K+ NP ++
Sbjct: 521 DPEIQNILTDPVMRQVLSDLQENPSAAQKHMQNPMVM 557
>At5g03690.2 68418.m00329 fructose-bisphosphate aldolase, putative
similar to PIR|S65073 fructose-bisphosphate aldolase (EC
4.1.2.13) isoenzyme C-1, cytosolic [Oryza sativa];
contains Pfam profile PF00274 Fructose-bisphosphate
aldolase class-I
Length = 359
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -3
Query: 582 NLESRLQVHQNVYQVSLVI*L*QQHFRIVLIFNEICWITCNIFECCRYF--RILECCHNF 409
N S L +H+N Y ++ + Q++ + ++ EI + E C Y R+L C+
Sbjct: 152 NEPSELAIHENAYGLARYAVICQENGLVPIVEPEILVDGSHDIEKCAYVTERVLAACYKA 211
Query: 408 WIKEHVI 388
HVI
Sbjct: 212 LSDHHVI 218
>At5g03690.1 68418.m00328 fructose-bisphosphate aldolase, putative
similar to PIR|S65073 fructose-bisphosphate aldolase (EC
4.1.2.13) isoenzyme C-1, cytosolic [Oryza sativa];
contains Pfam profile PF00274 Fructose-bisphosphate
aldolase class-I
Length = 393
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -3
Query: 582 NLESRLQVHQNVYQVSLVI*L*QQHFRIVLIFNEICWITCNIFECCRYF--RILECCHNF 409
N S L +H+N Y ++ + Q++ + ++ EI + E C Y R+L C+
Sbjct: 186 NEPSELAIHENAYGLARYAVICQENGLVPIVEPEILVDGSHDIEKCAYVTERVLAACYKA 245
Query: 408 WIKEHVI 388
HVI
Sbjct: 246 LSDHHVI 252
>At1g07560.1 68414.m00809 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 856
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -1
Query: 536 RL*FSYNSSILGLF*YLMKFAGLLVTSLNAADISGSWNAAIISGSRNMSLKSSR 375
+L FS N+ G+ +L K LLV +L+ ++SGS A+++ +N S +
Sbjct: 440 KLDFSNNNLTGGVPEFLAKMKSLLVINLSGNNLSGSVPQALLNKVKNGSCNKKK 493
>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 821
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 68 KFEESSHDLCESLKIDYDDQTNEWLNEVKP 157
K EE D E +KIDYD NE +E P
Sbjct: 493 KLEEGDGD--EEMKIDYDSDMNEEKDEANP 520
>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
(Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies)
Length = 346
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 538 NLVDVLVDLQAAFQVLVDPNLALDHGRPPTMTS 636
N V+++ ++ ++ DPNL +H PPT TS
Sbjct: 56 NRVEIVQLDESNGEIRSDPNLCFEHPYPPTKTS 88
>At4g21390.1 68417.m03090 S-locus lectin protein kinase family
protein contains Pfam profiles: PF00954 S-locus
glycoprotein family, PF00069 protein kinase domain,
PF01453 lectin (probable mannose binding)
Length = 849
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 437 SGSWNAAIISGSRNMSL 387
SG WN+AI +G NMSL
Sbjct: 217 SGQWNSAIFTGIPNMSL 233
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,488,673
Number of Sequences: 28952
Number of extensions: 248156
Number of successful extensions: 756
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -