Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00501
(731 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13128| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35) 35 0.078
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 33 0.32
SB_5476| Best HMM Match : Caerin_1 (HMM E-Value=2.1) 33 0.32
SB_58895| Best HMM Match : SRCR (HMM E-Value=0) 28 6.8
SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066) 28 6.8
SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_22940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_19720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_13128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 60.9 bits (141), Expect = 1e-09
Identities = 24/51 (47%), Positives = 34/51 (66%)
Frame = +3
Query: 525 LSQHLWDINVPFILCQSVGFLGSFRIQIREHAVTETHPDNEQTDLRLDEPF 677
L+ LW VP ++C+S GF+G R+ + EH + E+HPD+ DLRLD PF
Sbjct: 6 LAHVLWSDKVPLLVCRSYGFIGYMRLVLEEHPIIESHPDSAFEDLRLDRPF 56
>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMS--SKGLNRGSEALRLVLELNPAVQGHAVQ 429
+ L GI +IT+ D S D+GS FFL + NR + V ELNP V H
Sbjct: 48 LTLAGIKSITLHDTRAASMADLGSQFFLREDDVTSSRNRAVASAGRVAELNPYVSVHT-- 105
Query: 430 EPPDQILDENPDFFKSF 480
D + + N D K++
Sbjct: 106 -QTDALDENNLDVLKNY 121
>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
Length = 1026
Score = 34.7 bits (76), Expect = 0.078
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +1
Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAVQEP 435
+VL G+ ++T+ D V D+ S FFL G NR + + ELN V
Sbjct: 96 VVLGGVKSVTLHDTGAVELSDLTSQFFLNKKDVGKNRAEVSHPRIAELNTYVS----MSV 151
Query: 436 PDQILDENPDFFKSFSLVIATTIS 507
Q L E +F F +V+ T S
Sbjct: 152 NTQKLTE--EFINKFQVVVLTESS 173
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 32.7 bits (71), Expect = 0.32
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 VLPGIGAITIVDDCTVS-DEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAVQEP 435
+L G + I+DDC VS D SN F++++ G + G L L+ E++ +V+ + +EP
Sbjct: 1511 LLSGTNTLIILDDCAVSRDLKRRSNKFIDLAFSGRHDG---LSLLSEMS-SVEDYMKEEP 1566
Query: 436 PDQILD-ENPDFFKSFSLVIATTI 504
++ D K SL I T+
Sbjct: 1567 EVEVSSIPKDDEVKRESLAILATL 1590
>SB_5476| Best HMM Match : Caerin_1 (HMM E-Value=2.1)
Length = 225
Score = 32.7 bits (71), Expect = 0.32
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 VLPGIGAITIVDDCTVS-DEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAVQEP 435
+L G + I+DDC VS D SN F++++ G + G L L+ E++ +V+ + +EP
Sbjct: 72 LLSGTNTLIILDDCAVSRDLKRRSNKFIDLAFSGRHDG---LSLLSEMS-SVEDYMKEEP 127
Query: 436 PDQILD-ENPDFFKSFSLVIATTI 504
++ D K SL I T+
Sbjct: 128 EVEVSSIPKDDEVKRESLAILATL 151
>SB_58895| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1838
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 540 WDINVPFILCQSVGFLGSFRIQIREHA 620
W I + ++C+S+GF SF +Q+R+ A
Sbjct: 1243 WSIRLANVVCRSLGF--SFALQVRDRA 1267
Score = 27.9 bits (59), Expect = 9.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 540 WDINVPFILCQSVGFLGSFRIQIREH 617
WDIN ++C+S+G+ + ++ H
Sbjct: 1648 WDINAAHVVCRSLGYRRALEFKVYAH 1673
>SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)
Length = 716
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 259 VLPGIGAITIVDDCTVS-DEDIGSNFFLEMSSKGLNRGSEALRLVLEL 399
+L G + I+DDC VS D SN F++++ G + G L +L
Sbjct: 436 LLSGTNTLIILDDCAVSKDLKQRSNKFIDLAFSGRHEGLSVWVLTQQL 483
>SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1756
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 342 FQKEITAYIFITNCAIINYSNCTNSWKNYHFNI-SVPKAVALIKHMCPLSRALCP*SPHK 166
FQ Y + CA I+ + C N + H ++ S P+ +LIK + A+C S +
Sbjct: 469 FQNISREYDGVYRCAAISGAECRNVTLDVHVSVNSKPENTSLIK---SVGSAVCVNSSMR 525
Query: 165 RSCRS 151
SC S
Sbjct: 526 LSCTS 530
>SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 259 VLPGIGAITIVDDCTVS-DEDIGSNFFLEMSSKGLNRGSEALRLVLEL 399
+L G + I+DDC VS D SN F++++ G + G L +L
Sbjct: 935 LLSGTNTLIILDDCAVSRDLKQRSNKFIDLAFSGRHAGLSVWVLTQQL 982
>SB_22940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 259 VLPGIGAITIVDDCTVS-DEDIGSNFFLEMSSKGLNRGSEALRLVLEL 399
+L G + I+DDC VS D SN F++++ G + G L +L
Sbjct: 296 LLSGTNTLIILDDCAVSRDLKQRSNKFIDLAFSGRHAGLSVWVLTQQL 343
>SB_19720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 285 SNCTNSWKNYHFNISVPKAVALIKHMCPLSRALCP*SPHKRSCRSYCLFFSL 130
S C NSW + S ++A +KH+C + C SP ++ S F L
Sbjct: 41 STCDNSWFGQNCLASRSPSLARVKHLCQ-GKQSCVISPTQKVLGSTSCTFGL 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,806,193
Number of Sequences: 59808
Number of extensions: 361115
Number of successful extensions: 703
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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