Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00501
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula (ubiq...    68   8e-12
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    39   0.003
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    39   0.003
Z72502-6|CAA96591.1|  343|Caenorhabditis elegans Hypothetical pr...    38   0.010
U64851-2|AAC47987.1|  613|Caenorhabditis elegans Hypothetical pr...    31   0.64 
U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula
           (ubiquitin activating)homolog protein 1 protein.
          Length = 541

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 32/89 (35%), Positives = 50/89 (56%)
 Frame = +1

Query: 247 IEMIVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAV 426
           ++ +VL G+ +  +VDD  V   DIG NFFL     G +R    L  + ELNP+V G A 
Sbjct: 43  LKSLVLAGVQSFYVVDDAKVEQADIGQNFFLHADDIGRSRAEATLEKLTELNPSVSGSAS 102

Query: 427 QEPPDQILDENPDFFKSFSLVIATTISEK 513
            +PP  +  E+ +   +FS+V+A   +E+
Sbjct: 103 SQPPTALAMEDVEKLTTFSVVVAANQNEE 131



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 22/56 (39%), Positives = 38/56 (67%)
 Frame = +3

Query: 510 KVTQSLSQHLWDINVPFILCQSVGFLGSFRIQIREHAVTETHPDNEQTDLRLDEPF 677
           ++  + ++ L++I VPFI  ++ G +G+ RI I+EH +  +H +N + DLRLD PF
Sbjct: 131 EIDTTFAKVLYNIRVPFICIKTFGLIGTIRICIKEHTIANSHEENPRPDLRLDAPF 186



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/36 (50%), Positives = 28/36 (77%)
 Frame = +2

Query: 146 QYDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
           +YDRQ+RLWG+ GQ+++ S   C++ + +L TEILK
Sbjct: 9   RYDRQVRLWGEEGQASIGSTSACVLGSDSLATEILK 44


>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/81 (29%), Positives = 41/81 (50%)
 Frame = +1

Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAVQEP 435
           ++L G+  +TI D       D+ + ++L  +  G NR +     + ELN +V    VQ  
Sbjct: 59  LILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVN---VQVS 115

Query: 436 PDQILDENPDFFKSFSLVIAT 498
            D++ +E   F K+F LV+ T
Sbjct: 116 TDELTEE---FVKTFDLVVLT 133


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/81 (29%), Positives = 41/81 (50%)
 Frame = +1

Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAVQEP 435
           ++L G+  +TI D       D+ + ++L  +  G NR +     + ELN +V    VQ  
Sbjct: 144 LILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVN---VQVS 200

Query: 436 PDQILDENPDFFKSFSLVIAT 498
            D++ +E   F K+F LV+ T
Sbjct: 201 TDELTEE---FVKTFDLVVLT 218


>Z72502-6|CAA96591.1|  343|Caenorhabditis elegans Hypothetical
           protein C08B6.9 protein.
          Length = 343

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 149 YDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
           YDRQ+RLWG   Q+ + +  + +I    LG E+ K
Sbjct: 11  YDRQIRLWGMEAQNKIRNSKVLIIGGKQLGAEVAK 45



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +1

Query: 262 LPGIGAITIVDDCTVSDEDIGSNFFLEMS--SKGLNRGSEALRLVLELNPAVQGHAVQEP 435
           L G+  + +VD   V  E+IG NF  + S  +  + + + +   +  LN  V+   V+E 
Sbjct: 49  LAGVDEMHLVDHRLVDTEEIGMNFLYDASVDNSKMTKWAASYNFLYNLNRNVKLFIVEED 108

Query: 436 PDQILD-ENPDFFKSFSLVI 492
                D E  ++   F+LV+
Sbjct: 109 VLSKNDSEIEEYLTKFTLVV 128


>U64851-2|AAC47987.1|  613|Caenorhabditis elegans Hypothetical
           protein F28A12.1 protein.
          Length = 613

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 291 NYSNCTNSWKNYHFNISVPKAVALIKHMCPLS--RALCP*SPH 169
           N+ NCT+SW   H+N ++P + +  + +C  +  + LC  SP+
Sbjct: 310 NWGNCTSSWPE-HYNTNLPYSSSACQALCVSNYFKKLCGCSPY 351


>U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical
           protein C10G8.3 protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 303 CAIINYSNCTNSWKNYHFN-ISVPKAVALIKHMCPLSRALCP*SPHKRSCRSYC 145
           C   NY+ C ++W N+  +     + + L  H CP +  +   +  K  C   C
Sbjct: 57  CLAFNYTGCGHNWNNFATSQACYEECLPLDHHKCPAASKIHKTTKGKTVCNDDC 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,062
Number of Sequences: 27780
Number of extensions: 285778
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)