Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00500
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                149   2e-36
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           34   0.14 
SB_58081| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_10517| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)                29   3.9  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)                 28   9.0  
SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)                   28   9.0  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  149 bits (361), Expect = 2e-36
 Identities = 67/85 (78%), Positives = 77/85 (90%)
 Frame = +1

Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
           +VETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+++RG V
Sbjct: 125 RVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNV 184

Query: 433 AGDSKNNPPKGAADFTAQVIVLNHP 507
           AGD KNNPPK    FTAQVIV+NHP
Sbjct: 185 AGDFKNNPPKPCKSFTAQVIVMNHP 209



 Score =  101 bits (241), Expect = 8e-22
 Identities = 43/69 (62%), Positives = 55/69 (79%)
 Frame = +3

Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 689
           +I  GY+PVLDC TAHIACKF ++ EK+DRR+GK  E NPK IK+GDAA+V ++PSKP+C
Sbjct: 211 EIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMC 270

Query: 690 VESFQNSHP 716
           VE+F    P
Sbjct: 271 VETFTEFPP 279



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 6/75 (8%)
 Frame = +2

Query: 56  NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTXKXLRLPLQDV 217
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+   LRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 218 YKIGGIGTVPVGKLK 262
           YKIGGIGTVPVG+++
Sbjct: 113 YKIGGIGTVPVGRVE 127


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 591 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQN 707
           +D++TGK  +  P+ IK    AI  L     +C+E F +
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSD 534


>SB_58081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
 Frame = +1

Query: 199 SSPARRIQNRWYWYRARRQVETGVLKPGTIVVFAPA----NITTEVKSVEMHHEAL---- 354
           +SP +   N  Y YR  + + +G+L   T  + AP      +T +  +VE+HH       
Sbjct: 113 ASPTKWTANLRYQYRTTQTISSGLLSVSTTTLVAPGVVRQTVTHDEAAVEVHHLVRVLMD 172

Query: 355 -QEAVPGDNVG 384
            +E V G+++G
Sbjct: 173 EEERVDGESLG 183


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +3

Query: 555 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 683
           HIA K  E+K   D ++ K+ ++ PK++ SGD    ++VP++P
Sbjct: 74  HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112


>SB_10517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 211 RRIQNRWYWYRARRQVETGVLKPGTIVVFA 300
           +R + R YWYRAR+ +  G+L P + +V A
Sbjct: 60  KRKKVRGYWYRARKPIFLGILLPISWLVIA 89


>SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -3

Query: 416 NSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTCRRARY 237
           N  T T  T  PT++P    +  S  IS    SV+++AG    +V    TP    +RA Y
Sbjct: 2   NLTTVTPSTTTPTVTPSDRQYFLSKVISYAAVSVLIIAGNLLCLVVFLRTPQMRRKRAYY 61


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
 Frame = +1

Query: 190 APXSSPARRIQNRWYWYRARRQVETGVLKPGTIVVFAPANITTEVKSVEMHH---EALQE 360
           AP     + +   WY++      E   LK  T   F+  + TTE  S ++ H   E  + 
Sbjct: 174 APLGEEYKNVLEDWYYHDLELAKEVSELKATTAKEFSKLSATTEKMSGDIQHTTEEVSKL 233

Query: 361 AVPGDNVGFNVKNV--SVK-ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPVKS 516
            V  + +  +++++  S++ +   G+VA  S      GA    A    +++ V +
Sbjct: 234 KVTTEKIAGDIQDIKRSIQGQSSSGHVANISNVTLKDGATSAVADNATVSNTVSA 288



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 190  APXSSPARRIQNRWYWYRARRQVETGVLKPGTIVVFAPANITTEVKSVEMHH 345
            AP     + +   WY++      E   L+  T   F+  + TTE  S ++ H
Sbjct: 1572 APLGEECKNVLEDWYYHDLELAKEVSELRVTTAKEFSKLSATTEKMSEDIQH 1623


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 576 LQICRQCGQCXNPILVCNRLRFDRMVKHNDLSCKICS 466
           L +C QCGQC +P   C  ++ ++M+      C  C+
Sbjct: 767 LIVCSQCGQCFHP--YCVGVKVNKMILSKGWRCLDCT 801


>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
          Length = 726

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 576 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQNSHPS 719
           EI     R TG++TE+N  ++ SG+  I  +V +   C+   Q   P+
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGPT 302


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 44  WHGDNMLEPSTKMPWFKGWQVERKE 118
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 250 RQVETGVLKPGTIVVFAPANITTEVKSVEMHHE-ALQEAVPGDNVGFNVKNVSVKELRRG 426
           RQVE   +     VVF P NI+ +   ++     A ++ +P     + +KN    + R G
Sbjct: 3   RQVEFNTIVKE--VVFDPENISVDEGMIKFKGRLAFRQYMPAKPTKYGIKNWMAADARNG 60

Query: 427 YV 432
           YV
Sbjct: 61  YV 62


>SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 304 ANITTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 459
           A+ TT          A+Q E  PG ++G   + + VKEL++   AG +   PP
Sbjct: 49  ASATTSTTGSHQAMSAMQSEEEPGASMGHRTERLKVKELKQMKRAGLTPLRPP 101


>SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)
          Length = 583

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 284 VPGFNTPVSTCRRARYQYH 228
           VPG NTP+STC   +  Y+
Sbjct: 488 VPGDNTPLSTCHNRKVAYY 506


>SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)
          Length = 210

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 284 VPGFNTPVSTCRRARYQYH 228
           VPG NTP+STC   +  Y+
Sbjct: 115 VPGDNTPLSTCHNRKVAYY 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,666,382
Number of Sequences: 59808
Number of extensions: 577864
Number of successful extensions: 1739
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)