Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00500
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 144 6e-35
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 144 6e-35
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 144 6e-35
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 47 2e-05
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 38 0.010
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 35 0.068
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 35 0.068
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 35 0.068
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 1.9
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 29 2.6
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 29 2.6
AF016655-9|AAK31440.1| 348|Caenorhabditis elegans Hypothetical ... 29 3.4
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 7.8
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 7.8
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 7.8
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 7.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 144 bits (349), Expect = 6e-35
Identities = 64/87 (73%), Positives = 75/87 (86%)
Frame = +2
Query: 2 GTSPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 181
G +P AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RP
Sbjct: 148 GYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRP 207
Query: 182 TXKXLRLPLQDVYKIGGIGTVPVGKLK 262
T + LRLPLQDVYKIGGIGTVPVG+++
Sbjct: 208 TDRPLRLPLQDVYKIGGIGTVPVGRVE 234
Score = 136 bits (330), Expect = 1e-32
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +1
Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
+VETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V
Sbjct: 232 RVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSV 291
Query: 433 AGDSKNNPPKGAADFTAQVIVLNHP 507
DSK +P K A F AQVI++NHP
Sbjct: 292 CSDSKQDPAKEARTFHAQVIIMNHP 316
Score = 113 bits (273), Expect = 9e-26
Identities = 52/69 (75%), Positives = 57/69 (82%)
Frame = +3
Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 689
QISNGYTPVLDC TAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLC
Sbjct: 318 QISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLC 377
Query: 690 VESFQNSHP 716
VESF + P
Sbjct: 378 VESFTDYAP 386
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 144 bits (349), Expect = 6e-35
Identities = 64/87 (73%), Positives = 75/87 (86%)
Frame = +2
Query: 2 GTSPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 181
G +P AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RP
Sbjct: 182 GYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRP 241
Query: 182 TXKXLRLPLQDVYKIGGIGTVPVGKLK 262
T + LRLPLQDVYKIGGIGTVPVG+++
Sbjct: 242 TDRPLRLPLQDVYKIGGIGTVPVGRVE 268
Score = 136 bits (330), Expect = 1e-32
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +1
Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
+VETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V
Sbjct: 266 RVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSV 325
Query: 433 AGDSKNNPPKGAADFTAQVIVLNHP 507
DSK +P K A F AQVI++NHP
Sbjct: 326 CSDSKQDPAKEARTFHAQVIIMNHP 350
Score = 113 bits (273), Expect = 9e-26
Identities = 52/69 (75%), Positives = 57/69 (82%)
Frame = +3
Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 689
QISNGYTPVLDC TAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLC
Sbjct: 352 QISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLC 411
Query: 690 VESFQNSHP 716
VESF + P
Sbjct: 412 VESFTDYAP 420
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 144 bits (349), Expect = 6e-35
Identities = 64/87 (73%), Positives = 75/87 (86%)
Frame = +2
Query: 2 GTSPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 181
G +P AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RP
Sbjct: 182 GYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRP 241
Query: 182 TXKXLRLPLQDVYKIGGIGTVPVGKLK 262
T + LRLPLQDVYKIGGIGTVPVG+++
Sbjct: 242 TDRPLRLPLQDVYKIGGIGTVPVGRVE 268
Score = 136 bits (330), Expect = 1e-32
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +1
Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
+VETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V
Sbjct: 266 RVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSV 325
Query: 433 AGDSKNNPPKGAADFTAQVIVLNHP 507
DSK +P K A F AQVI++NHP
Sbjct: 326 CSDSKQDPAKEARTFHAQVIIMNHP 350
Score = 113 bits (273), Expect = 9e-26
Identities = 52/69 (75%), Positives = 57/69 (82%)
Frame = +3
Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 689
QISNGYTPVLDC TAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLC
Sbjct: 352 QISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLC 411
Query: 690 VESFQNSHP 716
VESF + P
Sbjct: 412 VESFTDYAP 420
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/70 (40%), Positives = 33/70 (47%)
Frame = +3
Query: 42 DGTETTCWSLQPKCLGSRDGRWSVKKAKLTENASLKLSMXSCHLPAPLXSXXVFPCKTYT 221
D TETTC C GSRDG + +K L E S +L S H A L VF + T
Sbjct: 178 DSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCT 237
Query: 222 KSVVLVPCPS 251
+S L P S
Sbjct: 238 RSEELEPSQS 247
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = +2
Query: 26 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTXKXLRLP 205
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+ LR+
Sbjct: 350 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 396
Query: 206 LQDVYKIGGIGTVPVGKLK 262
+ DV K+ V GK++
Sbjct: 397 ISDVLKVASNQLVVSGKIE 415
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = +2
Query: 26 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTXKXLRLP 205
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+ LR+
Sbjct: 368 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 414
Query: 206 LQDVYKIGGIGTVPVGKLK 262
+ DV K+ V GK++
Sbjct: 415 ISDVLKVASNQLVVSGKIE 433
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +1
Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
++E+G ++ G +V P +V + + V GDN+ F +K + EL+ G++
Sbjct: 358 KMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFI 417
Query: 433 AGDSKNNPPKGAADFTAQVIVLNH 504
S ++ K F A+V+VL H
Sbjct: 418 I-CSPDSLAKTGRVFDAEVLVLEH 440
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 37.5 bits (83), Expect = 0.010
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Frame = +1
Query: 232 YWYRARRQVETGVLKPGTI-----VVFAPAN----ITTEVKSVEMHHEALQEAVPGDNVG 384
YW + +G L GTI ++ P + + +KS+ + G +
Sbjct: 381 YWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCGQSAS 440
Query: 385 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHP 507
F +K + K++R+G V D K P F A+++VL+HP
Sbjct: 441 FALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHP 480
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 34.7 bits (76), Expect = 0.068
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +1
Query: 253 QVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKEL 417
++E G+LK G I + T VKSV E + + +A PGD +G ++ + K++
Sbjct: 272 KLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDV 331
Query: 418 RRGYV 432
RRG V
Sbjct: 332 RRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 34.7 bits (76), Expect = 0.068
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +1
Query: 253 QVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKEL 417
++E G+LK G I + T VKSV E + + +A PGD +G ++ + K++
Sbjct: 273 KLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDV 332
Query: 418 RRGYV 432
RRG V
Sbjct: 333 RRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 34.7 bits (76), Expect = 0.068
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +1
Query: 253 QVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKEL 417
++E G+LK G I + T VKSV E + + +A PGD +G ++ + K++
Sbjct: 273 KLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDV 332
Query: 418 RRGYV 432
RRG V
Sbjct: 333 RRGCV 337
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +1
Query: 265 GVLKPGTIVVFAPANITT----EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
G L G V+ P T V S+ +A+ PG+ ++ LRRG V
Sbjct: 427 GQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMV 486
Query: 433 AGDSKNNPPKGAADFTAQVIVLNHPVK 513
+ + PP +FTA +++L H K
Sbjct: 487 LAEIDHQPPV-CYEFTANLLLLCHSTK 512
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 274 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 399
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 83 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTXKXLRLPLQDVYKIGGIGTVPVG 253
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 254 KLK 262
L+
Sbjct: 260 TLE 262
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 83 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTXKXLRLPLQDVYKIGGIGTVPVG 253
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 254 KLK 262
L+
Sbjct: 260 TLE 262
>AF016655-9|AAK31440.1| 348|Caenorhabditis elegans Hypothetical
protein C17F4.5 protein.
Length = 348
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 431 LLVTPKTTHLRVLQILQLKSLCLTILSNLKRLHTSI 538
LL+ P + L+ + L++K+LCLTI SN+ + S+
Sbjct: 112 LLLIPNSEVLKFPESLKVKALCLTIQSNVASVMGSL 147
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 488 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 357
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LDCXTAHIACKFAEIKEKVDRRTGKSTE 620
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LDCXTAHIACKFAEIKEKVDRRTGKSTE 620
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 537 LDCXTAHIACKFAEIKEKVDRRTGKSTE 620
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,696,374
Number of Sequences: 27780
Number of extensions: 418257
Number of successful extensions: 1172
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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