Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00500
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   170   1e-44
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   167   1e-43
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   161   8e-42
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   124   9e-31
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   124   9e-31
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   6.8  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  170 bits (413), Expect = 1e-44
 Identities = 79/85 (92%), Positives = 82/85 (96%)
 Frame = +1

Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
           +VETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV
Sbjct: 266 RVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 325

Query: 433 AGDSKNNPPKGAADFTAQVIVLNHP 507
           AGDSKNNPPKGAADFTAQVIVLNHP
Sbjct: 326 AGDSKNNPPKGAADFTAQVIVLNHP 350



 Score =  167 bits (405), Expect = 1e-43
 Identities = 74/87 (85%), Positives = 80/87 (91%)
 Frame = +2

Query: 2   GTSPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 181
           G +PAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RP
Sbjct: 182 GYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP 241

Query: 182 TXKXLRLPLQDVYKIGGIGTVPVGKLK 262
           T K LRLPLQDVYKIGGIGTVPVG+++
Sbjct: 242 TDKALRLPLQDVYKIGGIGTVPVGRVE 268



 Score =  122 bits (294), Expect = 3e-30
 Identities = 56/69 (81%), Positives = 60/69 (86%)
 Frame = +3

Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 689
           QISNGYTPVLDC TAHIACKFA+IKEK DRR GK+TE NPKSIKSGDAAIV LVPSKP+C
Sbjct: 352 QISNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMC 411

Query: 690 VESFQNSHP 716
            E+FQ   P
Sbjct: 412 AEAFQEFPP 420



 Score = 26.6 bits (56), Expect = 0.24
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +2

Query: 686 MC-RVLPEFPPLGRFAV 733
           MC     EFPPLGRFAV
Sbjct: 410 MCAEAFQEFPPLGRFAV 426


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  167 bits (405), Expect = 1e-43
 Identities = 74/87 (85%), Positives = 80/87 (91%)
 Frame = +2

Query: 2   GTSPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 181
           G +PAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RP
Sbjct: 125 GYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP 184

Query: 182 TXKXLRLPLQDVYKIGGIGTVPVGKLK 262
           T K LRLPLQDVYKIGGIGTVPVG+++
Sbjct: 185 TDKALRLPLQDVYKIGGIGTVPVGRVE 211



 Score =  129 bits (311), Expect = 3e-32
 Identities = 60/66 (90%), Positives = 63/66 (95%)
 Frame = +1

Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
           +VETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV
Sbjct: 209 RVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 268

Query: 433 AGDSKN 450
           AGDSKN
Sbjct: 269 AGDSKN 274


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  161 bits (390), Expect = 8e-42
 Identities = 73/85 (85%), Positives = 80/85 (94%)
 Frame = +1

Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
           +VETG+LKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYV
Sbjct: 266 RVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYV 325

Query: 433 AGDSKNNPPKGAADFTAQVIVLNHP 507
           AGDSKN PP+GAADFTAQVIVLNHP
Sbjct: 326 AGDSKNQPPRGAADFTAQVIVLNHP 350



 Score =  159 bits (385), Expect = 3e-41
 Identities = 70/87 (80%), Positives = 79/87 (90%)
 Frame = +2

Query: 2   GTSPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 181
           G + A+VAFVPISGWHGDNMLEPS K PW+KGW+VERK+G ADGK LIEALDAILPP+RP
Sbjct: 182 GYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRP 241

Query: 182 TXKXLRLPLQDVYKIGGIGTVPVGKLK 262
           T K LRLPLQDVYKIGGIGTVPVG+++
Sbjct: 242 TDKALRLPLQDVYKIGGIGTVPVGRVE 268



 Score =  123 bits (297), Expect = 2e-30
 Identities = 57/69 (82%), Positives = 61/69 (88%)
 Frame = +3

Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 689
           QISNGYTPVLDC TAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+KP+C
Sbjct: 352 QISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMC 411

Query: 690 VESFQNSHP 716
           VE+FQ   P
Sbjct: 412 VEAFQEFPP 420



 Score = 26.6 bits (56), Expect = 0.24
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +2

Query: 686 MC-RVLPEFPPLGRFAV 733
           MC     EFPPLGRFAV
Sbjct: 410 MCVEAFQEFPPLGRFAV 426



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 377 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 270
           L PG     A   ++T++ SV M   A T  +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  124 bits (299), Expect = 9e-31
 Identities = 54/63 (85%), Positives = 57/63 (90%)
 Frame = +2

Query: 2   GTSPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 181
           G +PAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RP
Sbjct: 109 GYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP 168

Query: 182 TXK 190
           T K
Sbjct: 169 TDK 171


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  124 bits (299), Expect = 9e-31
 Identities = 56/61 (91%), Positives = 59/61 (96%)
 Frame = +1

Query: 325 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 504
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 505 P 507
           P
Sbjct: 61  P 61



 Score =  106 bits (255), Expect = 2e-25
 Identities = 50/57 (87%), Positives = 52/57 (91%)
 Frame = +3

Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 680
           QISNGYTPVLDC TAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 63  QISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 211 RRIQNRWYWYRARRQVETGVLKPGTIV 291
           + ++NR    RA R+   G +KPG+I+
Sbjct: 368 KALRNRARKARANRKPNLGDIKPGSII 394


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 521 RLHTSIGLXHCPHC 562
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 403 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 501
           S ++LR  ++A +   + PKG      Q++VLN
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLN 315


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 324 DFSSDVGGGKDNNGTWFQHTSFNLPTGTVPIPPI 223
           +FS+ +     N+G  F+  S   P    P+PP+
Sbjct: 14  EFSATLDTVVPNSGELFKAGSAEQPKEQEPLPPV 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,011
Number of Sequences: 438
Number of extensions: 4905
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)