Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00500
(733 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 141 4e-34
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 141 4e-34
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 141 4e-34
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 141 4e-34
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 87 9e-18
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 39 0.004
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 39 0.004
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 36 0.021
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 35 0.048
At3g44350.1 68416.m04765 no apical meristem (NAM) family protein... 30 1.8
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 29 3.2
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 29 3.2
At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma mem... 29 4.2
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 29 4.2
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 5.6
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 28 5.6
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 28 7.3
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co... 27 9.7
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 141 bits (342), Expect = 4e-34
Identities = 61/85 (71%), Positives = 78/85 (91%)
Frame = +1
Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
+VETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYV
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYV 313
Query: 433 AGDSKNNPPKGAADFTAQVIVLNHP 507
A +SK++P KGAA+FT+QVI++NHP
Sbjct: 314 ASNSKDDPAKGAANFTSQVIIMNHP 338
Score = 94.3 bits (224), Expect = 7e-20
Identities = 48/87 (55%), Positives = 59/87 (67%)
Frame = +2
Query: 2 GTSPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 181
G +P + FVPISG+ GDNM+E ST + W+KG L+EALD I P RP
Sbjct: 182 GYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRP 229
Query: 182 TXKXLRLPLQDVYKIGGIGTVPVGKLK 262
+ K LRLPLQDVYKIGGIGTVPVG+++
Sbjct: 230 SDKPLRLPLQDVYKIGGIGTVPVGRVE 256
Score = 90.6 bits (215), Expect = 9e-19
Identities = 39/69 (56%), Positives = 50/69 (72%)
Frame = +3
Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 689
QI NGY PVLDC T+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMV 399
Query: 690 VESFQNSHP 716
VE+F P
Sbjct: 400 VETFSEYPP 408
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 141 bits (342), Expect = 4e-34
Identities = 61/85 (71%), Positives = 78/85 (91%)
Frame = +1
Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
+VETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYV
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYV 313
Query: 433 AGDSKNNPPKGAADFTAQVIVLNHP 507
A +SK++P KGAA+FT+QVI++NHP
Sbjct: 314 ASNSKDDPAKGAANFTSQVIIMNHP 338
Score = 94.3 bits (224), Expect = 7e-20
Identities = 48/87 (55%), Positives = 59/87 (67%)
Frame = +2
Query: 2 GTSPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 181
G +P + FVPISG+ GDNM+E ST + W+KG L+EALD I P RP
Sbjct: 182 GYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRP 229
Query: 182 TXKXLRLPLQDVYKIGGIGTVPVGKLK 262
+ K LRLPLQDVYKIGGIGTVPVG+++
Sbjct: 230 SDKPLRLPLQDVYKIGGIGTVPVGRVE 256
Score = 90.6 bits (215), Expect = 9e-19
Identities = 39/69 (56%), Positives = 50/69 (72%)
Frame = +3
Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 689
QI NGY PVLDC T+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMV 399
Query: 690 VESFQNSHP 716
VE+F P
Sbjct: 400 VETFSEYPP 408
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 141 bits (342), Expect = 4e-34
Identities = 61/85 (71%), Positives = 78/85 (91%)
Frame = +1
Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
+VETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYV
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYV 313
Query: 433 AGDSKNNPPKGAADFTAQVIVLNHP 507
A +SK++P KGAA+FT+QVI++NHP
Sbjct: 314 ASNSKDDPAKGAANFTSQVIIMNHP 338
Score = 94.3 bits (224), Expect = 7e-20
Identities = 48/87 (55%), Positives = 59/87 (67%)
Frame = +2
Query: 2 GTSPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 181
G +P + FVPISG+ GDNM+E ST + W+KG L+EALD I P RP
Sbjct: 182 GYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRP 229
Query: 182 TXKXLRLPLQDVYKIGGIGTVPVGKLK 262
+ K LRLPLQDVYKIGGIGTVPVG+++
Sbjct: 230 SDKPLRLPLQDVYKIGGIGTVPVGRVE 256
Score = 90.6 bits (215), Expect = 9e-19
Identities = 39/69 (56%), Positives = 50/69 (72%)
Frame = +3
Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 689
QI NGY PVLDC T+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMV 399
Query: 690 VESFQNSHP 716
VE+F P
Sbjct: 400 VETFSEYPP 408
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 141 bits (342), Expect = 4e-34
Identities = 61/85 (71%), Positives = 78/85 (91%)
Frame = +1
Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
+VETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYV
Sbjct: 254 RVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYV 313
Query: 433 AGDSKNNPPKGAADFTAQVIVLNHP 507
A +SK++P KGAA+FT+QVI++NHP
Sbjct: 314 ASNSKDDPAKGAANFTSQVIIMNHP 338
Score = 94.3 bits (224), Expect = 7e-20
Identities = 48/87 (55%), Positives = 59/87 (67%)
Frame = +2
Query: 2 GTSPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 181
G +P + FVPISG+ GDNM+E ST + W+KG L+EALD I P RP
Sbjct: 182 GYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRP 229
Query: 182 TXKXLRLPLQDVYKIGGIGTVPVGKLK 262
+ K LRLPLQDVYKIGGIGTVPVG+++
Sbjct: 230 SDKPLRLPLQDVYKIGGIGTVPVGRVE 256
Score = 90.6 bits (215), Expect = 9e-19
Identities = 39/69 (56%), Positives = 50/69 (72%)
Frame = +3
Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 689
QI NGY PVLDC T+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+
Sbjct: 340 QIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMV 399
Query: 690 VESFQNSHP 716
VE+F P
Sbjct: 400 VETFSEYPP 408
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 87.4 bits (207), Expect = 9e-18
Identities = 38/69 (55%), Positives = 50/69 (72%)
Frame = +3
Query: 510 QISNGYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 689
QI NGYTPVLDC T+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P+KP+
Sbjct: 6 QIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMV 65
Query: 690 VESFQNSHP 716
VE++ P
Sbjct: 66 VEAYSAYPP 74
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 244 ARRQVETGVLKPGTIVVFAPANITTE--VKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 417
A +VE G +K G V T V VEM + L EA+ GDNVG ++ + ++
Sbjct: 305 ATGRVERGTVKVGETVDLVGLRETRSYTVTGVEMFQKILDEALAGDNVGLLLRGIQKADI 364
Query: 418 RRGYV 432
+RG V
Sbjct: 365 QRGMV 369
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 140 LIEALDAILP-PARPTXKXLRLPLQDVYKIGGIGTVPVGKLK 262
L++A+D +P P R T L ++DV+ I G GTV G+++
Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVE 310
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/82 (24%), Positives = 42/82 (51%)
Frame = +1
Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
+VE+G ++ G +V P +V ++ + ++ A PG+N+ + + +++ G+V
Sbjct: 349 KVESGSIREGDSLVVMPNKEQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFV 408
Query: 433 AGDSKNNPPKGAADFTAQVIVL 498
S NP +F AQ+ +L
Sbjct: 409 L-SSIVNPVPAVTEFVAQLQIL 429
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +3
Query: 522 GYTPVLDCXTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESF 701
GY +L C+ E+K ++D +T K + +K+G A + + + +C+E F
Sbjct: 440 GYKAILHIHAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKF 499
Query: 702 QN 707
+
Sbjct: 500 SD 501
Score = 33.5 bits (73), Expect = 0.15
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 20 VAFVPISGWHGDNMLEPSTK--MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTXKX 193
V F+PISG G NM + + PW W G E LD+I P R
Sbjct: 283 VVFLPISGLMGKNMDQRMGQEICPW---W---------SGPSFFEVLDSIEIPPRDPNGP 330
Query: 194 LRLPLQDVYKIGGIGTVPVGKLK 262
R+P+ D +K +GTV +GK++
Sbjct: 331 FRMPIIDKFK--DMGTVVMGKVE 351
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 140 LIEALDAILP-PARPTXKXLRLPLQDVYKIGGIGTVPVGKLK 262
L++A+D +P P R K +P++DV+ I G GTV G+++
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIE 290
Score = 33.9 bits (74), Expect = 0.11
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +1
Query: 244 ARRQVETGVLKPGTIVVFAPAN-----ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSV 408
A ++E GV+K G V + + V VEM + L GDNVG ++ +
Sbjct: 285 ATGRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKR 344
Query: 409 KELRRGYVAGDSKNNPPKGAADFTAQVIVL 498
++++RG V +K K F A++ VL
Sbjct: 345 EDIQRGMVI--AKPGSCKTYKKFEAEIYVL 372
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +1
Query: 253 QVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 432
++E G ++PG+ V+ P+ ++S+E +A A GDNV ++ + ++ G V
Sbjct: 489 KLEAGAVRPGSKVMVMPSGDQGTIRSLERDSQACTIARAGDNVALALQGIDANQVMAGDV 548
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 561 ACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQNS 710
A ++ +D +TG+ T+ +P+ + + +A++ + P+CVE+F S
Sbjct: 591 AATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSES 640
>At3g44350.1 68416.m04765 no apical meristem (NAM) family protein
Tobacco elicitor-responsive gene (TERN), NAC-domain
protein, Nicotiana tabacum, EMBL:AB021178
Length = 228
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 733 DSKTTEGWEFWKDSTHRGLE-GTKLTMAASPDLMDFGLTSVDLPVRRSTFS 584
D + TE + ++ G+E ++ T++ SP+ G VDLPV +T +
Sbjct: 155 DRRPTEAYAIERNLPSNGVETSSRATISTSPETSHSGGNQVDLPVNATTIT 205
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -3
Query: 389 LKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTCRR 246
L+P+LS + C+S LT V ML+ A+TT++P + P R+
Sbjct: 428 LEPSLSRTLIEANETGCLSQALTVVAMLS-AETTLLPARSKPSEKKRK 474
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -2
Query: 378 IVSRYSFLESFVVHLHRF-DFSSDVGGGKDNNGTWF---QHTSFNLPTGTVPIP 229
IVSR ++ S V++ R S+ + KD G W H FN P G P+P
Sbjct: 1495 IVSRMRYISSQVINKIRIVALSTSLANAKDL-GEWIGASSHGLFNFPPGVRPVP 1547
>At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA10)
identical to SP|Q9SZR1 Potential calcium-transporting
ATPase 10, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 10) {Arabidopsis thaliana};
similar to SP|Q9LF79 Calcium-transporting ATPase 8,
plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
8) {Arabidopsis thaliana}
Length = 1069
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 368 GTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT 267
G + WR W S DLT ++++ A ++ G T
Sbjct: 178 GRSFWRFVWEASQDLTLIILIVAAVASLALGIKT 211
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 62 LEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 160
++ T W KG++V EGK CL EA++A
Sbjct: 189 IDSGTLSKWTKGFKVSGMEGKNVVACLNEAMEA 221
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 567 KFAEIKEKVDRRTGKSTEVNPKSI 638
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 113 KEGKADGKCLIEALDAILPPARPTXK 190
KE +A G + +ALD +PP RP K
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRK 99
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 246 PSAS*NWCVETRYHCCLCPRQHHY*SQIC 332
P+ + C R+HC LC R+ +Y S C
Sbjct: 66 PNHTLELCSNLRFHCDLCGRRTNYLSYYC 94
>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1611
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 322 VKSVEMHHEALQEAVPGDNVGFNV-KNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 498
++S + E D+VG N+ +V+ E+ + VA S + PP + + V
Sbjct: 754 IESCVRYSETNASLAGSDDVGMNLLASVAADEMSKSPVASPSVSQPPNSLMNENSTVGNN 813
Query: 499 NHPVKSQTVTHQYWIATLPTL 561
+ S + H+ A PTL
Sbjct: 814 TKLMASDGLPHKQHQAVRPTL 834
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,854,863
Number of Sequences: 28952
Number of extensions: 390270
Number of successful extensions: 1166
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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