Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00499
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323...    28   4.8  
05_04_0137 + 18343106-18344686                                         27   8.4  

>02_01_0449 -
           3229260-3229365,3230264-3230396,3230536-3230625,
           3231097-3231309,3232317-3232407,3232519-3232707,
           3232810-3232920,3233018-3233110
          Length = 341

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 465 KMYFMLIYETVNDDERDTSERSRKNARTRLSVTFGRTRRFDVFAVCARAFRILYI 301
           KM  + ++ TV D ERDT E+ R           G T   D     ARA+R+ Y+
Sbjct: 237 KMEVVPVFITV-DPERDTVEQVRDYVNEFHPNLIGLTGTTDEIRKVARAYRVYYM 290


>05_04_0137 + 18343106-18344686
          Length = 526

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 257 LLYILRFEISNIIIFMYKMRNARAHTAK-TSKRRVRPNVTESRVRAFLRER 406
           L Y+L F ++ +++F +  R  R+  AK T+  R  PN        F+R R
Sbjct: 6   LAYVLLFLVTAVLLF-HLRRGGRSAPAKLTTAHRPHPNPVLGNTVEFIRNR 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,249,736
Number of Sequences: 37544
Number of extensions: 107712
Number of successful extensions: 228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)