Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00499
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine re...    27   5.7  
AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine
           receptor, class h protein2, isoform b protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 248 YMLLLYILRFE-ISNIIIFMYKMRNARAHTAKT 343
           +++L+ IL +  ++ I IF+Y+M  A  HTA T
Sbjct: 93  FLILVVILIYNGLACIFIFLYRMEVASKHTAPT 125


>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 432 NDDERDTSERSRKNARTRLSVTFGRTRRFDVFAVCARAFRILYINIIIFEISN 274
           ND + + + +S   A    S + G T  F+       + R LYI +I F+IS+
Sbjct: 64  NDTQSERAAQSLIFANPIKSWSSGNTYFFNTIEPMQYSLRALYIRVISFQISH 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,907,560
Number of Sequences: 27780
Number of extensions: 117392
Number of successful extensions: 343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)