Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00499
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa...    27   5.3  
At5g41505.1 68418.m05040 hypothetical protein                          27   9.3  

>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 193

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 152 VRSRARTR*SKEKLTDVLVFLTCVCVRCTTVF 247
           VRSR R   ++E L+ V +FL C    C  +F
Sbjct: 162 VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193


>At5g41505.1 68418.m05040 hypothetical protein
          Length = 245

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 263 YILRFEISNIIIFMYKMRNARAHTAKTSKRRVRPNVTESRVR 388
           +IL+F   N I F++  RN R H  + S       + +  VR
Sbjct: 179 FILKFVFENAIHFIWTERNDRRHGERPSTTEKMVKLIDKNVR 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,969,478
Number of Sequences: 28952
Number of extensions: 95922
Number of successful extensions: 223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)