Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00498
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   0.89 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.6  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   3.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.3  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.3  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 506 NSLTQYCFGLYTHTRHTVNNH 444
           N  T++     THTRHT  +H
Sbjct: 267 NRFTRHLIQRRTHTRHTTTSH 287


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 117 VADIPLLVHHPTDLVYREIHHF 52
           V  + L++H  T L+YR   HF
Sbjct: 678 VIGMNLIIHVGTQLIYRPFSHF 699


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 501 AIASASSLFCS*TKWTV 551
           A+ASA ++ C  T WT+
Sbjct: 16  ALASAGNVVCYFTSWTI 32


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 115 CGYSASCPSSHGSRLP*NSPF*MVYDF 35
           CG+    PS HG      +P+   YD+
Sbjct: 467 CGFGPWKPSMHGGVCDPYTPWHTFYDY 493


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 257 DQRSCSSLRVSVKRVSPALAPAMIPA 180
           D+R   S  V+   VSPA  P++ P+
Sbjct: 182 DRRKFISALVNAPSVSPASLPSISPS 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,114
Number of Sequences: 336
Number of extensions: 4085
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)