Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00498
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 102 7e-23
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 102 7e-23
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 74 3e-14
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 56 4e-09
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 44 3e-05
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 40 3e-04
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.026
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.026
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.026
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 30 0.32
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.7
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 1.7
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 3.0
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 5.2
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 26 5.2
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 26 6.9
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 26 6.9
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 25 9.1
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.1
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 25 9.1
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.1
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.1
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 102 bits (244), Expect = 7e-23
Identities = 47/66 (71%), Positives = 55/66 (83%)
Frame = +1
Query: 55 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 234
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 235 KDEQDR 252
DEQ+R
Sbjct: 61 ADEQER 66
Score = 91.1 bits (216), Expect = 2e-19
Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 ITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVT 431
+TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVT
Sbjct: 68 VTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVT 122
Query: 432 DGALXXXXXXXXXXXQTETVLRQAI 506
DGAL QTETVLRQA+
Sbjct: 123 DGALVVVDTIEGVCVQTETVLRQAL 147
Score = 50.0 bits (114), Expect = 4e-07
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +2
Query: 509 ERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEC 670
ERI+P++ +NK+DR YQ F R+VE+VNV+I+TY D +G+C
Sbjct: 149 ERIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDK--VLGDC 200
Score = 48.8 bits (111), Expect = 9e-07
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +1
Query: 661 G*VRVDPSKGSVGFGSGLHGWAFTLKQFSEMYA 759
G +V P KG+V F SGLHGWAFT++QF+ YA
Sbjct: 198 GDCQVFPDKGTVAFASGLHGWAFTVRQFANRYA 230
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 102 bits (244), Expect = 7e-23
Identities = 47/66 (71%), Positives = 55/66 (83%)
Frame = +1
Query: 55 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 234
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 235 KDEQDR 252
DEQ+R
Sbjct: 61 ADEQER 66
Score = 91.1 bits (216), Expect = 2e-19
Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 ITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVT 431
+TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVT
Sbjct: 68 VTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVT 122
Query: 432 DGALXXXXXXXXXXXQTETVLRQAI 506
DGAL QTETVLRQA+
Sbjct: 123 DGALVVVDTIEGVCVQTETVLRQAL 147
Score = 50.0 bits (114), Expect = 4e-07
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +2
Query: 509 ERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEC 670
ERI+P++ +NK+DR YQ F R+VE+VNV+I+TY D +G+C
Sbjct: 149 ERIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDK--VLGDC 200
Score = 48.8 bits (111), Expect = 9e-07
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +1
Query: 661 G*VRVDPSKGSVGFGSGLHGWAFTLKQFSEMYA 759
G +V P KG+V F SGLHGWAFT++QF+ YA
Sbjct: 198 GDCQVFPDKGTVAFASGLHGWAFTVRQFANRYA 230
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 73.7 bits (173), Expect = 3e-14
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +3
Query: 255 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 434
IT+KS+AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+ D
Sbjct: 68 ITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLCD 119
Query: 435 GALXXXXXXXXXXXQTETVLRQA 503
GA QT TVLRQA
Sbjct: 120 GAFVLVDAVEGVCSQTITVLRQA 142
Score = 63.3 bits (147), Expect = 4e-11
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +1
Query: 73 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 252
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 679 PSKGSVGFGSGLHGWAFTLKQFSEMY 756
P +G+V F S GWAF L QFSE Y
Sbjct: 212 PEQGNVVFASAYDGWAFCLDQFSEFY 237
Score = 34.7 bits (76), Expect = 0.015
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 503 YCERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY 640
+ +RIK IL +NKMDR + R+VE VN +I T+
Sbjct: 143 WIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLVEQVNAVIGTF 188
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 56.4 bits (130), Expect = 4e-09
Identities = 34/82 (41%), Positives = 44/82 (53%)
Frame = +3
Query: 255 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 434
ITI+S A +E + N Q+ EK + IN+ID+PGH+DF+ EV ALRV D
Sbjct: 113 ITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLD 170
Query: 435 GALXXXXXXXXXXXQTETVLRQ 500
GA+ QT TV RQ
Sbjct: 171 GAVLVLCAVSGVQSQTITVDRQ 192
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 61 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGII 192
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +1
Query: 79 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR*S 258
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D K E +R
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLD--KLEVERRR 104
Query: 259 PLNLRPSLCS 288
+ ++ CS
Sbjct: 105 GITVKAQTCS 114
Score = 39.1 bits (87), Expect = 7e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 351 KGFLINLIDSPGHVDFSSEVTAALRVTDGAL 443
+ +L+NLID+PGHVDF +EV +L +G +
Sbjct: 122 QSYLLNLIDTPGHVDFRAEVMHSLAACEGCI 152
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +3
Query: 363 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 503
INLID+PGH DF+ EV ++ V DGA+ QT+ V +QA
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQA 141
Score = 34.7 bits (76), Expect = 0.015
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1
Query: 106 NIRNMSVIAHVDHGKSTLTDSLVSKAG 186
+IRN+ +IAH+D GK+TLT+ ++ G
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGG 53
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 351 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 506
K F ID+PGHVDF EV A + ++DG + T +++ AI
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAI 258
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 670 RVDPSKGSVGFGSGLHGWAFTLKQFSEMYAD 762
RV P G+V F S G+ FTL F+++Y D
Sbjct: 310 RVSPELGNVCFASCDLGYCFTLSSFAKLYID 340
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.026
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 186
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.026
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 186
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.026
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 186
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 97 KKRNIRNMSVIAHVDHGKSTLTDSL 171
KK ++ N+ I HVDHGK+TLT ++
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAI 73
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 493 STVSVCTHTPDTQSTT-TRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 317
+T S + +P + STT T +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 316 NTKSFSSSSKNIEMAV 269
++ S SSSS + + +
Sbjct: 195 SSSSSSSSSSSSSVPI 210
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -1
Query: 496 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 317
++TVS + + T S+++ +PS + + TS S+ S S S S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 316 NTKSFSSSSKN 284
++ S SSSS +
Sbjct: 184 SSSSSSSSSSS 194
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 118 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 219
++++ HVDHGK+TL D+ K+ I + G T+
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQ 206
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 106 SASCPSSHGSRLP*NSPF*MVYDFCSIK-PTTIP 8
+ASCP SH L + PF + + C IK P +P
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIKHPDDVP 450
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 115 NMSVIAHVDHGKSTLTDSLVSKAGII 192
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 403 EEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSS-SSKNIEMAVDLMVIN 251
EE + P + K KK S F+ T +S S++NI+ A+DL+ +N
Sbjct: 66 EEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLN 117
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.8 bits (54), Expect = 6.9
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Frame = +1
Query: 49 SKMVN-FTVDEIRGMMDKKRNIRNMSVIAH--VDHGKSTLTDSLVSKAG----IIAGARA 207
SKM N + I+ K RN +A V K+ D+ +S + + G A
Sbjct: 92 SKMRNTVNLQHIQAANQKTRNAEGERKVAQRRVQSDKAEANDAAMSSSAPTVDVSEGNSA 151
Query: 208 GETRFT----DTRKDEQDR*SPLNLRPSLCSSSLKRKI*YSSQTLTSVKRVRKV 357
E + T DT + D +N+ + S K + + T S KRV KV
Sbjct: 152 AEPKITPDDSDTPRLNVDMNDKINVDEAAAKSDSKLNVDQINSTTESEKRVEKV 205
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 232 RKDEQDR*SPLNLRPSLCSSSLKRKI-*YSSQTLTSVKR 345
+KD R SPLN + + S +K+K+ ++S T TS+++
Sbjct: 424 QKDSMRRSSPLNEKVTASSERMKKKLALFASSTDTSMQK 462
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 617 VNVIIATYNDDGGPMGECVSTLARALLVSGL 709
++V + DDG M C++ AL+ +G+
Sbjct: 120 ISVYLHVLQDDGAVMASCINATTLALIDAGI 150
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 9.1
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -1
Query: 493 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 314
S+ S T TP + STT+ + S + S ++S S+ + + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 313 TKSFSSSSKN 284
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 355 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLM 260
P S +S W+ V+NTK SFS ++M +L+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELI 199
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 111 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 16
D P + +H D ++E H RW + +LLN++
Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 140 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 247
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,181
Number of Sequences: 5004
Number of extensions: 67698
Number of successful extensions: 235
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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