Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00498
(775 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 99 3e-21
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 56 3e-08
At5g13650.2 68418.m01585 elongation factor family protein contai... 55 6e-08
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 54 1e-07
At5g13650.1 68418.m01584 elongation factor family protein contai... 53 2e-07
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 52 3e-07
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 52 3e-07
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 50 2e-06
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 49 4e-06
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 49 4e-06
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 48 7e-06
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 48 7e-06
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 44 1e-04
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 32 0.37
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 32 0.37
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 32 0.37
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 32 0.37
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 32 0.37
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 32 0.37
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 30 1.5
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 30 1.5
At5g17810.1 68418.m02088 homeobox-leucine zipper transcription f... 30 2.0
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 30 2.0
At3g06620.1 68416.m00769 protein kinase family protein contains ... 29 2.6
At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containi... 29 2.6
At3g03660.1 68416.m00369 homeobox-leucine zipper transcription f... 29 3.4
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 4.5
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 29 4.5
At4g05632.1 68417.m00875 hypothetical protein 28 6.0
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 99.1 bits (236), Expect = 3e-21
Identities = 48/66 (72%), Positives = 53/66 (80%)
Frame = +1
Query: 55 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 234
MV FT DE+R +MD K NIRNMSVIAHVDHGKSTLTDSLV+ AGIIA AG+ R TDTR
Sbjct: 1 MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
Query: 235 KDEQDR 252
DE +R
Sbjct: 61 ADEAER 66
Score = 89.8 bits (213), Expect = 2e-18
Identities = 49/84 (58%), Positives = 60/84 (71%)
Frame = +3
Query: 255 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 434
ITIKST IS+++E+ ++ L T R+ +E +LINLIDSPGHVDFSSEVTAALR+TD
Sbjct: 68 ITIKSTGISLYYEMTDESLKSFTGA--RDGNE--YLINLIDSPGHVDFSSEVTAALRITD 123
Query: 435 GALXXXXXXXXXXXQTETVLRQAI 506
GAL QTETVLRQA+
Sbjct: 124 GALVVVDCIEGVCVQTETVLRQAL 147
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 458 CVWCVCTNRNSTA-SGYCERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 634
C+ VC + ERI+P+L +NKMDR YQTF R++EN NVI+A
Sbjct: 131 CIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMA 190
Query: 635 TYND 646
TY D
Sbjct: 191 TYED 194
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +1
Query: 661 G*VRVDPSKGSVGFGSGLHGWAFTLKQFSEMYA 759
G V+V P KG+V F +GLHGWAFTL F++MYA
Sbjct: 198 GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 230
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = +3
Query: 351 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 503
K + +NLIDSPGH+DF SEV+ A R++DGAL QT VLRQA
Sbjct: 72 KDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQA 122
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +1
Query: 103 RNIRNMSVIAHVDHGKSTLTDSLV--SKAGIIAGARAGETRFTDTRKDEQDR 252
R +RN+ ++AHVDHGK+TL D L+ S G++ AG+ RF D +EQ R
Sbjct: 7 RKVRNICILAHVDHGKTTLADHLIASSGGGVLHPRLAGKLRFMDYLDEEQRR 58
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 503 YCERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDD 649
+ E++ P L +NK+DR Y RIV VN I++ Y +
Sbjct: 123 WIEKLTPCLVLNKIDRLIFELRLSPMEAYTRLIRIVHEVNGIVSAYKSE 171
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 667 VRVDPSKGSVGFGSGLHGWAFTLKQFSEMYA 759
V P KG+V F L GW F + +F+ YA
Sbjct: 202 VTFQPQKGNVVFVCALDGWGFGIAEFANFYA 232
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 54.8 bits (126), Expect = 6e-08
Identities = 23/69 (33%), Positives = 44/69 (63%)
Frame = +1
Query: 46 PSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT 225
PS +V+ + +D++ N+RN++++AHVDHGK+TL DS++ +A + + + R
Sbjct: 62 PSTAEPASVEVKKKQLDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIM 121
Query: 226 DTRKDEQDR 252
D+ E++R
Sbjct: 122 DSNDLERER 130
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 351 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 506
K +N+ID+PGH DF EV L + DG L QT VL++A+
Sbjct: 144 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKAL 195
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/80 (41%), Positives = 45/80 (56%)
Frame = +3
Query: 264 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 443
+ TA + E E++ + IT+ +K IN+ID+PGHVDF+ EV ALRV DGA+
Sbjct: 131 EGTATMDWMEQEQERGITITSAATTTFWDK-HRINIIDTPGHVDFTLEVERALRVLDGAI 189
Query: 444 XXXXXXXXXXXQTETVLRQA 503
Q+ETV RQA
Sbjct: 190 CLFDSVAGVEPQSETVWRQA 209
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 103 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGE----TRFTDTRKDEQDR 252
++ RN+ ++AH+D GK+T T+ ++ G + GE T D + EQ+R
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG--RNYKIGEVHEGTATMDWMEQEQER 145
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 52.8 bits (121), Expect = 2e-07
Identities = 20/54 (37%), Positives = 38/54 (70%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 252
+D++ N+RN++++AHVDHGK+TL DS++ +A + + + R D+ E++R
Sbjct: 76 LDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIMDSNDLERER 129
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 351 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 506
K +N+ID+PGH DF EV L + DG L QT VL++A+
Sbjct: 143 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKAL 194
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +3
Query: 339 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 506
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R AI
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAI 258
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +1
Query: 85 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDR 252
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQER 188
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +1
Query: 673 VDPSKGSVGFGSGLHGWAFTLKQFSEMYA 759
+DP+ G+V F SG GW+FTL+ F++MYA
Sbjct: 313 IDPAAGNVCFASGTAGWSFTLQSFAKMYA 341
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +3
Query: 339 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 506
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R AI
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAI 258
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +1
Query: 85 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDR 252
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQER 188
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +1
Query: 673 VDPSKGSVGFGSGLHGWAFTLKQFSEMYA 759
+DP+ G+V F SG GW+FTL+ F++MYA
Sbjct: 313 IDPAAGNVCFASGTAGWSFTLQSFAKMYA 341
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +3
Query: 339 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 506
+ K +L N++D+PG+V+FS E+TA+LR+ DGA+ TE +R AI
Sbjct: 189 DSRSKSYLCNIMDTPGNVNFSDEMTASLRLADGAVFIVDAAQGVMVNTERAIRHAI 244
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +1
Query: 85 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDR 252
G+M +RN++++ H+ HGK+ D LV + ++ A R+TDTR DEQ+R
Sbjct: 116 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHRMSTFNAENDKHMRYTDTRVDEQER 174
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +1
Query: 673 VDPSKGSVGFGSGLHGWAFTLKQFSEMYA 759
+DP+ G+V F SG GW+FTL+ F+ MYA
Sbjct: 299 IDPAAGNVCFASGTAGWSFTLQSFARMYA 327
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +3
Query: 351 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 500
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 180
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 192
MDK +RN+ + AH+D GK+TLT+ ++ G I
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +3
Query: 351 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 500
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 180
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 192
MDK +RN+ + AH+D GK+TLT+ ++ G I
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRI 92
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +3
Query: 255 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 434
IT+K+ +MF+E + +D + G+L+NLID+PGHVDFS EV+ +L
Sbjct: 112 ITVKAQTATMFYENKVED-----------QEASGYLLNLIDTPGHVDFSYEVSRSLSACQ 160
Query: 435 GAL 443
GAL
Sbjct: 161 GAL 163
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +1
Query: 109 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQ 246
IRN S+IAH+DHGKSTL D L+ G I G+ ++ D + E+
Sbjct: 66 IRNFSIIAHIDHGKSTLADRLMELTGTIKKGH-GQPQYLDKLQRER 110
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = +1
Query: 106 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 252
NIRN S+IAH+DHGKSTL D L+ G + R + +F D E++R
Sbjct: 85 NIRNFSIIAHIDHGKSTLADKLLQVTGTVQN-RDMKEQFLDNMDLERER 132
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 357 FLINLIDSPGHVDFSSEVTAALRVTDGAL 443
F +NLID+PGHVDFS EV+ +L +GAL
Sbjct: 152 FCLNLIDTPGHVDFSYEVSRSLAACEGAL 180
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +1
Query: 61 NFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKD 240
+FTV RG ++K+ N+ I HVDHGK+TLT +L I + A + D +
Sbjct: 63 SFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDEIDAAPE 122
Query: 241 EQDR*SPLN 267
E+ R +N
Sbjct: 123 ERARGITIN 131
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 186
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 523 RLDALAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 392
++D+ A T S T PD ST T APSVT+ + + EK+
Sbjct: 372 KVDSEACQNHPTASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 415
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 523 RLDALAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 392
++D+ A T S T PD ST T APSVT+ + + EK+
Sbjct: 633 KVDSEACQNHPTASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 676
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 186
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 186
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 186
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 115 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 252
N+ I HVDHGK+TLT ++ A+A D +E+ R
Sbjct: 69 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKR 114
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 118 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 219
++++ HVDHGK+TL D + K+ + A G T+
Sbjct: 504 ITIMGHVDHGKTTLLD-YIRKSKVAASEAGGITQ 536
>At5g17810.1 68418.m02088 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana};
Length = 268
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 128 SPTSITASQPSRTRWFPRPVSLLVRE 205
SP+S T+++P R RW P+P +L+ E
Sbjct: 9 SPSS-TSTEPVRARWSPKPEQILILE 33
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 115 NMSVIAHVDHGKSTLTDSLVSKAGIIA 195
N++++ HVD GKSTL+ L+ G I+
Sbjct: 241 NLAIVGHVDSGKSTLSGRLLHLLGRIS 267
>At3g06620.1 68416.m00769 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 773
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = -1
Query: 568 LELKKSTVHFVHEQNRLDALAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 389
LEL++S H E +RL + + SV H P ++ APS +S A + S
Sbjct: 14 LELEESQEHLKQEMSRLKVSTELRQRSHSVSPHRPARRNIGEGAPSWRKSGAASFRNASP 73
Query: 388 CPGES 374
ES
Sbjct: 74 LRKES 78
>At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 970
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 694 VGFGSGLHGWAFTLKQFSEMYADNS 768
+G G G+HGWA L+ E+ +N+
Sbjct: 308 IGLGKGVHGWAVKLRLDKELVLNNA 332
>At3g03660.1 68416.m00369 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana}
Length = 199
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 128 SPTSITASQPSRTRWFPRPVSLLVRE 205
S + T+++P R+RW P+P +L+ E
Sbjct: 20 SASGSTSAEPVRSRWSPKPEQILILE 45
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 118 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAG 210
++V+ HVDHGK++L D+L + + +A AG
Sbjct: 222 VTVMGHVDHGKTSLLDALRNTS--VAAREAG 250
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 608 VENVNVIIATYNDDGGPMGECVSTLARALLVSGL 709
V+N NVI+ + G + +CVST+ A LV+ L
Sbjct: 1120 VDNCNVILRAIMEKCGDVDDCVSTVEAAELVAKL 1153
>At4g05632.1 68417.m00875 hypothetical protein
Length = 197
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 218 VSLTRVRTNKTVDHH*IYGHLYVLR-A*RERFSIHHK 325
VSL+R + ++HH +Y HL LR + E SIH +
Sbjct: 62 VSLSRTKQGSALEHHKLYMHLTKLRQSVLEASSIHDR 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,525,978
Number of Sequences: 28952
Number of extensions: 368596
Number of successful extensions: 1178
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -