Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00495
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    31   0.15 
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    28   1.8  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   5.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   9.8  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   9.8  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 555 ERQESWLQNHPFAKCANMDLPVYQRVI-IQILAFIAAHTFGIRLIYPGSLFLIH 713
           +R+E WL   P+       L +  R++     AF  +HT G  ++YP   FL+H
Sbjct: 664 KRREPWLYGEPYTSLVRELLRIRYRLLPTWYTAFYNSHTHGFPILYP--QFLMH 715


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 406 AYGRSYSPKYLKFIDTLDSPMDDKNAYL 489
           AY R++   Y +F+D++DS  +++N  L
Sbjct: 81  AYTRAFLKSYFRFLDSIDSGHNERNEAL 108


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 300 PIHNPTWLSFNGRSKNFNA 356
           P HNPT    NG S N+NA
Sbjct: 283 PTHNPTSSYGNGASTNYNA 301


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 812  RYGFRRKCRSWRAPRCRLDEL 750
            RY   R CR    P+C LD L
Sbjct: 1176 RYELERACRILSDPKCNLDHL 1196


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 229 LFNSDRAIRILLSSIEVNLVESRRKH 152
           LFN D  ++I++ +I  N  ESR +H
Sbjct: 145 LFNMDALLQIVMFNIYGNQYESREEH 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,582,261
Number of Sequences: 5004
Number of extensions: 76561
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)