Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00495
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    29   3.4  
01_01_0942 + 7428384-7429536,7429623-7430335                           29   4.5  

>03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,
            9759974-9760033,9760519-9760555,9761268-9761347,
            9761413-9761516,9761613-9761673,9762962-9763019,
            9763866-9763918,9764357-9765320,9766131-9766185,
            9767223-9768786
          Length = 1133

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +3

Query: 33   APRIFLFQLSRVKRKIQYYSAYNASSWGLLWLE*GVCGDACFLLDSTRFTSMDDKRIRIA 212
            A R+FL +L +V+ K+   +  ++  +GL  L   +CG      DS   T+ D K + + 
Sbjct: 993  ATRLFLRRL-KVELKLPVLALVDSDPYGLKILSVYMCGSKNMSYDSANLTTPDIKWLGVR 1051

Query: 213  RSELKR 230
             S+L +
Sbjct: 1052 PSDLDK 1057


>01_01_0942 + 7428384-7429536,7429623-7430335
          Length = 621

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 741 GRTQLVESTTGS-APRSALPTETISRQC 821
           GR+++  S+ G  APR   PTE I+R C
Sbjct: 53  GRSRMTSSSGGGRAPRGRAPTEAIARTC 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,290,944
Number of Sequences: 37544
Number of extensions: 495680
Number of successful extensions: 1241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)