Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00495
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00032-12|AAA50629.1|  482|Caenorhabditis elegans Hypothetical p...    37   0.020
U88180-5|AAB42299.1|  340|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical p...    29   5.3  
AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine r...    28   7.0  

>U00032-12|AAA50629.1|  482|Caenorhabditis elegans Hypothetical
           protein F37A4.1 protein.
          Length = 482

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +3

Query: 630 VIIQILAFIAAHTFGIRLIYPGSLFLIHNLLWSGLLSGRTQLVESTTG 773
           V+ + LA  A H FG  LIYPGS+ L+  ++   L + R  LV++  G
Sbjct: 153 VVTRGLASWAIHAFGRHLIYPGSMALLKYMMRPNLNAARKLLVQNKNG 200


>U88180-5|AAB42299.1|  340|Caenorhabditis elegans Hypothetical
           protein T27A3.6 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 358 FFGGIGCIATVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYLKAIRKYV 510
           +F  +   A V  + RA  RS +   L FID  +S  DDKN  +   R+ +
Sbjct: 143 YFVNVAFPAYVRHLERARQRSRTDSRLTFIDVSESKFDDKNKSIVNFRQQI 193


>Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.8 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 244 PCNGYTAIRIGYYATPLICLYIIQRGFLSMEEVKTL-MRFFGGIGC 378
           P  G   + IGY A PL+ LY      ++M  +K+   R  G + C
Sbjct: 276 PVFGIQFVEIGYIAPPLVALYPCLEPLVAMYCIKSFRFRILGWLTC 321


>AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine
           receptor, class i protein32 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = +3

Query: 75  KIQYYSAYNASSWG----LLWLE*GV-CGDACFLLDSTRFTSMDDKRIRIARSELKR 230
           ++Q ++ ++ +SW     ++ +  G+ CG A     +  F  M D + R++RS LKR
Sbjct: 178 ELQNFAIFHFNSWCYYLVVVTISGGLFCGGAAIFTTADMFRMMKDLQTRVSRSSLKR 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,739,280
Number of Sequences: 27780
Number of extensions: 422775
Number of successful extensions: 1105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)