Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00495
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   2.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   7.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.9  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 262 RYSRCKGPFTNLFN 221
           RY+RC+ P TN F+
Sbjct: 407 RYTRCENPKTNFFS 420


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 309 NPTWLSFNGRSKNFNALLRRHRLYSY 386
           N TWL  N   K+ N   ++   YS+
Sbjct: 440 NKTWLPVNENYKSLNLAAQKREYYSH 465


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 12  YLRGRTAAPRIFLFQLSRVKRKIQYYSAYNASSWGLLWLE*GVC 143
           YLR    + R+F +QL+ + +KI+      +    LLW E   C
Sbjct: 272 YLRFGCLSTRLFYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYC 315


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -3

Query: 477 LVVHGRVQSVNEFQIFRTVRSSICSHYEENSSY 379
           + +HG VQS +++ +   V ++   ++E    Y
Sbjct: 107 VTMHGTVQSYDKYDLLENVNNAARINWEYLDKY 139


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 545 SGKGYRPSGEVETYFLIAFRYAFLSSMGESKVSMNFKYFG 426
           SG  Y  SG+   Y   A     L+SMG   V + F   G
Sbjct: 240 SGSTYGVSGQRWQYAARAAISTMLASMGGGLVGLGFSLNG 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,893
Number of Sequences: 438
Number of extensions: 5808
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)