Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00494
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42) 34 0.10
SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 33 0.24
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19) 32 0.55
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027) 30 1.7
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012) 30 1.7
SB_57164| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_5121| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11) 30 2.2
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2) 29 3.9
SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5) 29 3.9
SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_3621| Best HMM Match : GIY-YIG (HMM E-Value=3) 29 3.9
SB_31706| Best HMM Match : Tropomyosin (HMM E-Value=2.7) 29 5.2
SB_53292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25) 29 5.2
SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37) 28 6.8
SB_15283| Best HMM Match : JmjC (HMM E-Value=4.1) 28 6.8
SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077) 28 9.0
SB_28895| Best HMM Match : p450 (HMM E-Value=0) 28 9.0
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 28 9.0
SB_1286| Best HMM Match : Ras (HMM E-Value=2e-09) 28 9.0
>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
Length = 832
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/49 (40%), Positives = 22/49 (44%)
Frame = +1
Query: 403 RTYYALFWNQDSSSKCELKTLCRQIRLSHQTTICTRRHVEEG*RKNKEP 549
R Y + SSKC K CRQ H TTIC R + NKEP
Sbjct: 101 RLCYNCLSSSHISSKCTSKFRCRQCGGKHHTTICERDKGQGPHPGNKEP 149
>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +1
Query: 403 RTYYALFWNQDSSSKCELKTLCRQIRLSHQTTICTR 510
R Y + SSKC K CRQ R H TTIC R
Sbjct: 414 RLCYNCLSSSHISSKCTSKFRCRQCRGKHHTTICER 449
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 682 RCLLFVVHVVDAYNRVLLPECA*RCFYH-TFSHTFLLNRVHVYLFGVLC 539
R + V + A+ V L C+ +C H F F L+R HVY+F + C
Sbjct: 422 RMFMSVFSISRAHIDVFLIACSFQCIPHGVFMSMFSLSRTHVYVFPIAC 470
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 622 CA*RCFYHT-FSHTFLLNRVHVYLFGVLCFFFTLLPHG 512
C+ RC H F F ++R H+ +F + C F +PHG
Sbjct: 414 CSCRCVPHRMFMSVFSISRAHIDVFLIAC-SFQCIPHG 450
>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
Length = 879
Score = 31.9 bits (69), Expect = 0.55
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +1
Query: 385 GLSTMNRTYYALFWNQDSSSKCELKTLCRQIRLSHQTTICTRRHVEEG*RKNKEP 549
G+ R Y + SSKC K CRQ TTIC R + NKEP
Sbjct: 207 GIVVKLRLCYNCLSSSHISSKCTSKFRCRQCGGKRHTTICERDKGQGPPPGNKEP 261
>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
Length = 442
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 550 RTDRRVHGSTERCEKTCDKNNVKRILEARLCYTHQQRG 663
RT R + ++C + C + I +A+LCY H G
Sbjct: 301 RTTMRCSPTVDKCHQFCPGGDCNLICQAKLCYPHCPSG 338
>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
Length = 489
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 550 RTDRRVHGSTERCEKTCDKNNVKRILEARLCYTHQQRG 663
RT R + ++C + C + I +A+LCY H G
Sbjct: 301 RTTMRCSPTVDKCHQFCPGGDCNLICQAKLCYPHCPSG 338
>SB_57164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/73 (24%), Positives = 29/73 (39%)
Frame = +1
Query: 493 TTICTRRHVEEG*RKNKEPRTDRRVHGSTERCEKTCDKNNVKRILEARLCYTHQQRGRQT 672
T++ T HV G NK P T V T + + + R+ T GR+
Sbjct: 99 TSVVTHAHVNGGRASNKRPLTSSHVTAQTRNEKLPLTHAQNEEVALTRVDRTDDDPGRRE 158
Query: 673 GDTEQRKDIRSKL 711
DT+ + + K+
Sbjct: 159 EDTQCLQGLEDKM 171
>SB_5121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/73 (24%), Positives = 29/73 (39%)
Frame = +1
Query: 493 TTICTRRHVEEG*RKNKEPRTDRRVHGSTERCEKTCDKNNVKRILEARLCYTHQQRGRQT 672
T++ T HV G NK P T V T + + + R+ T GR+
Sbjct: 99 TSVVTHAHVNGGRASNKRPLTSSHVTAQTRNEKLPLTHAQNEEVALTRVDRTDDDPGRRE 158
Query: 673 GDTEQRKDIRSKL 711
DT+ + + K+
Sbjct: 159 EDTQCLQGLEDKM 171
>SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11)
Length = 635
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 272 DGEGPTVQIREPGSSTFRPQEDTFW 346
DG+GPTV I G + F D FW
Sbjct: 495 DGKGPTVTIVRVGKNVFGGYSDNFW 519
>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = +2
Query: 50 RHKYCESAACCT*FVEV----RVHLPRTSRED*EQFLNYRIRELFLNSSQEWVQWKRGS* 217
R + C + + T F +V +V +P SRE +Y + LF +V W +
Sbjct: 138 RRRACWTVSLITIFSQVLTNIKVPIPAYSREKGYYTAHYPVFRLFPIILAIFVSWVICAI 197
Query: 218 LAGVSSRSSRPKNPSAAADGEGPTVQIREPGSSTFR 325
+ PKNP+ A + T+ +RE S+ FR
Sbjct: 198 ITAAGGFPDDPKNPNFLARTDARTIVLRE--SNWFR 231
>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
Length = 1388
Score = 29.1 bits (62), Expect = 3.9
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -2
Query: 93 TNHVQQAALSQYLWRVVSSVSQYSVTWKLV 4
T H LS+Y+W + ++ +Y ++W+++
Sbjct: 991 TKHRNSTELSKYVWTLKDNMIEYFISWRIL 1020
>SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5)
Length = 1595
Score = 29.1 bits (62), Expect = 3.9
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -2
Query: 93 TNHVQQAALSQYLWRVVSSVSQYSVTWKLV 4
T H LS+Y+W + ++ +Y ++W+++
Sbjct: 95 TKHRNSTELSKYVWTLKDNMIEYFISWRIL 124
>SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 29.1 bits (62), Expect = 3.9
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -2
Query: 93 TNHVQQAALSQYLWRVVSSVSQYSVTWKLV 4
T H LS+Y+W + ++ +Y ++W+++
Sbjct: 414 TKHRNSTELSKYVWTLKDNMIEYFISWRIL 443
>SB_3621| Best HMM Match : GIY-YIG (HMM E-Value=3)
Length = 216
Score = 29.1 bits (62), Expect = 3.9
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -2
Query: 93 TNHVQQAALSQYLWRVVSSVSQYSVTWKLV 4
T H LS+Y+W + ++ +Y ++W+++
Sbjct: 134 TKHRNSTELSKYVWTLKDNMIEYFISWRIL 163
>SB_31706| Best HMM Match : Tropomyosin (HMM E-Value=2.7)
Length = 275
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 532 RKNKEPRTDRRVHGSTERCEKTCDKNNVKRILEARLCYTHQQR 660
R+ K +RR+H ST D+ RI + RL HQQR
Sbjct: 44 RREKRQGAERRLHNSTRAANILRDR---LRIRQERLALVHQQR 83
>SB_53292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 659
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 518 WKKGKEKTKNPEQIDVYTVQQKGVRKRV 601
W KGK++TKNP+++ + K ++++
Sbjct: 526 WNKGKKRTKNPQRLSLAKYPTKKKQEKI 553
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 198 NGSEVRNLPEFPADQAARKTLAPQPTVKGL--LSRFGSQAQALFAPKK 335
NG ++ + + P D A K L P +K + FG+Q +A FAPK+
Sbjct: 411 NGEDLGSAFDLPED-AQGKALFPHVMIKNIDCSLNFGTQEEAWFAPKE 457
>SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25)
Length = 401
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Frame = +2
Query: 473 RFDSLTR--LPYVRVAMWKKGKEKTKNPEQIDVYTVQQKGVRKRVIKTTLSAFWK----Q 634
R+D L R + RV W K +E + I + Q+ GV ++ T+S WK +
Sbjct: 256 RWDKLRRAEIDLQRVQQWIKLEEAFEQERAITHTSAQRGGVLGLLLHQTISPDWKEEEDE 315
Query: 635 DSVIR--INNVD-DKQETPNSEKISDL 706
D R I+N + + +E E++SDL
Sbjct: 316 DEAERESIDNPNTEGEEEEGMERLSDL 342
>SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)
Length = 341
Score = 28.3 bits (60), Expect = 6.8
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Frame = +1
Query: 364 TNSARPSGLSTMNRTYYALFWNQDSSSKCEL---------KTLCRQI--RLSHQTTICTR 510
T+S + ST + +YY+ F ++ SSK E+ + L R+ + Q I +
Sbjct: 84 TSSRISTSCSTRSNSYYSDFSSESKSSKKEVYEKALSPWEEWLVRKTAEQREKQMRIREK 143
Query: 511 RHVE-EG*RKNKEPRTDRRVHGSTERCEKTCDKNNVKRILEARLCYTHQQRGRQTGDTEQ 687
R E E K ++ + D++ E+ + DK N K IL+++ Q +Q EQ
Sbjct: 144 RRKEKEEFEKQRKLKEDKQKE-IEEKINEWIDKKN-KEILKSKTSSQKLQEQKQAEKEEQ 201
Query: 688 RKDIRSKLDMA 720
+ I K +A
Sbjct: 202 NRTIEEKSKIA 212
>SB_15283| Best HMM Match : JmjC (HMM E-Value=4.1)
Length = 276
Score = 28.3 bits (60), Expect = 6.8
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -2
Query: 93 TNHVQQAALSQYLWRVVSSVSQYSVTW 13
T H LS+Y+W + ++++Y ++W
Sbjct: 237 TKHRNSTELSKYVWTLKDNMNEYFISW 263
>SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 605 LSHVFSHLSVEPCTRLSVRGSLFFLYPSSTWRRVHMVVW 489
L H F H++ C SV +LF L+ S TW + W
Sbjct: 1521 LPHWFVHVAWFLCITSSVTSALFTLFYSMTWGKEKSEEW 1559
>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
Length = 599
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/78 (29%), Positives = 32/78 (41%)
Frame = +1
Query: 460 TLCRQIRLSHQTTICTRRHVEEG*RKNKEPRTDRRVHGSTERCEKTCDKNNVKRILEARL 639
T RL H R HV RK +E R R + + E+ + +R LEA
Sbjct: 357 TTAENSRLQHMAEAKQREHVLWRQRKEEEERARREMEARRRKGEEEA-RRQKERELEA-- 413
Query: 640 CYTHQQRGRQTGDTEQRK 693
Q++ RQ D E R+
Sbjct: 414 --MRQEQERQKKDQELRR 429
>SB_28895| Best HMM Match : p450 (HMM E-Value=0)
Length = 492
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 140 VLNLRDSFAANVLSLLQITYNKQHFHNICGAWYRA 36
+ LRD N+L+ + T+N+ H ++ A+ +A
Sbjct: 235 IAELRDKLMGNILTFHKETFNENHIRDLTDAFLKA 269
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 328 PRRHVLDLRWPSTNSARPSGLSTMNRTYYALFWNQDSSSKCELKT 462
P + +LDL W A L ++ + WN D+ +K KT
Sbjct: 1209 PSKTILDLEWLGAQDACHDLLVALHAPSSMILWNADTGTKLWKKT 1253
>SB_1286| Best HMM Match : Ras (HMM E-Value=2e-09)
Length = 123
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 559 RRVHGSTERCEKTCDKNNVKRILEARLCYTHQQRGRQTG 675
RRV + E T +K N + ++E +L T Q+ +QTG
Sbjct: 81 RRVAAALPGMESTTEKTNKEDLIEVKLKDTPQEPPQQTG 119
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,676,546
Number of Sequences: 59808
Number of extensions: 587952
Number of successful extensions: 2213
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2212
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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