Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00493
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 149 6e-37
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 56 7e-09
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 37 0.003
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 34 0.025
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 33 0.058
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 33 0.058
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 31 0.18
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 31 0.18
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.23
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 31 0.23
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.31
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 30 0.31
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.31
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 30 0.41
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 30 0.41
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.71
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 0.94
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 1.2
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 28 1.6
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 28 1.6
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 2.2
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 27 2.2
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.2
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 2.2
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 27 2.9
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 27 3.8
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 27 3.8
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar... 26 5.0
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 26 5.0
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.0
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 6.6
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.6
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 6.6
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 26 6.6
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 8.8
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 8.8
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 149 bits (360), Expect = 6e-37
Identities = 72/161 (44%), Positives = 95/161 (59%)
Frame = +3
Query: 270 NEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT 449
N+V +Y+++GN WK +HD V +DWAP +NRIVTCS DRNAYV+ + DG W
Sbjct: 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92
Query: 450 TLVLLRINRAATCVKWSPMETSLLSGQELD*YQFAILRRKIIGGCLSILRSPFVRL*HLL 629
TLVLLR+NRAAT V+WSP E G ++ L+ P L
Sbjct: 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152
Query: 630 IGHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKL 752
HPNN+LL AG AD K V SAY++D++ +P +VWGS+L
Sbjct: 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRL 193
Score = 31.5 bits (68), Expect = 0.13
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Frame = +3
Query: 219 MSCMEQG*KSN----CFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV 386
++C++ KSN C N V+ + +G WKQT L+ + + W+PN ++
Sbjct: 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG-TWKQTLVLLRLNRAATFVRWSPNEDKFA 116
Query: 387 TCSVDRNAYVWTQGDDGKWATTLVLLR-INRAATCVKWSPMETSLLSG 527
S R V + W + L R + + W P L +G
Sbjct: 117 VGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 55.6 bits (128), Expect = 7e-09
Identities = 28/84 (33%), Positives = 43/84 (51%)
Frame = +3
Query: 276 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 455
V I +K +DW+ T L H+ V I W+ N N + TCS D++ ++W +D ++
Sbjct: 358 VSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRDKSVWIWEATEDDEFDCLA 417
Query: 456 VLLRINRAATCVKWSPMETSLLSG 527
VL + V W P E L+SG
Sbjct: 418 VLQEHTQDVKVVTWHPTEDLLVSG 441
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +3
Query: 267 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 446
+N + ++ +G+DW T L H V + ++PN N + + D N ++W + +
Sbjct: 444 DNSICFWRDDGDDWALTCQLQGHTNTVWALAFSPNGNTLASADNDGNVFLWIKISSNEDV 503
Query: 447 TTLVLLRINRAATCVKWSPMETSL 518
T+ I R A +W +TSL
Sbjct: 504 ATIDSTNILRPALQEEWK-QQTSL 526
Score = 31.1 bits (67), Expect = 0.18
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 324 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLVLLRINRAATCVKWS 500
L EH V + W P + +V+ S D + W GDD WA T L + +S
Sbjct: 419 LQEHTQDVKVVTWHPTEDLLVSGSYDNSICFWRDDGDD--WALTCQLQGHTNTVWALAFS 476
Query: 501 PMETSLLS 524
P +L S
Sbjct: 477 PNGNTLAS 484
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +3
Query: 300 NDWKQTNNLVEHDLRVMGIDWAPNTNR----IVTCSVDRNAYVWTQGDDGKW-ATTLVLL 464
N+W + L H + WAP+ + + S D+N ++WT+ DG W T L
Sbjct: 193 NNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEGDGPWQKTPLTEE 252
Query: 465 RINRAATCVKWS 500
+ A V WS
Sbjct: 253 KFPDIAWRVSWS 264
Score = 32.3 bits (70), Expect = 0.076
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Frame = +3
Query: 267 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT-NRIVTC-SVDRNAYVWTQGDDGK 440
+ V ++++ G W + + H V + WAP+ ++ C S D V DDG
Sbjct: 76 DGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGS 135
Query: 441 WATTLVLLRINRAATCVKWSPMETS 515
T + V WSP S
Sbjct: 136 -CDTRIFTAHEPGCNAVCWSPPSLS 159
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 33.9 bits (74), Expect = 0.025
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 321 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
NL H L V+ +D + ++ +VTCS D+N +W
Sbjct: 571 NLYGHKLPVLSMDISYDSKLLVTCSADKNVKIW 603
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 321 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 467
++ H +M + + P+T TCS DR W DGK ++ LR
Sbjct: 613 SIFAHQDSIMEVTFQPDTYNFFTCSKDREVRYW----DGKSFDLILKLR 657
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 32.7 bits (71), Expect = 0.058
Identities = 31/132 (23%), Positives = 54/132 (40%)
Frame = +3
Query: 273 EVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATT 452
+V+++ E N+++ N +H +P+ I SVD VW D K +
Sbjct: 82 DVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCKISE- 140
Query: 453 LVLLRINRAATCVKWSPMETSLLSGQELD*YQFAILRRKIIGGCLSILRSPFVRL*HLLI 632
L + C+ +SP ++SG + G L ++ + RL H+L
Sbjct: 141 --LDTKGKFGLCIDYSPNGRFIVSGHQT--------------GQLFLISTETGRLFHVLS 184
Query: 633 GHPNNILLVAGS 668
GH + + VA S
Sbjct: 185 GHTSPVRSVAFS 196
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 32.7 bits (71), Expect = 0.058
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 324 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATT 452
L+ H+ VM +DW P I++ S D + VW + G W T
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPDTNTGIWVVT 307
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 282 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ-GDDGKW 443
++K++ W Q ++ H V G+ W P ++ D+ ++ + D W
Sbjct: 352 LWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQTTRLFARFKKDNAW 406
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 258 SPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 434
+P + + +Y E W Q L H L V I ++P+ I++ DR + Q ++
Sbjct: 554 TPEHAVIRLY--ETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAEN 610
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +3
Query: 324 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 503
L H+ V+ ++++PN + +C D+ +W + K +L+ + CV+W P
Sbjct: 217 LAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKK--KSLITINNVSPLNCVRWRP 274
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.18
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +3
Query: 309 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 488
K+ L+ H V I W+P+ +++CS D++ +W D L + + +C
Sbjct: 246 KRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILW----DAFTGEKLRDYKHGFSVSC 301
Query: 489 VKWSPMETSLLSG 527
W P S ++G
Sbjct: 302 CCWLPDGLSFITG 314
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 330 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 434
EH+L +G+ W+ N+ + S D+N YVW+ D
Sbjct: 269 EHNL--LGVAWSRNSRFVGAGSSDKNVYVWSATGD 301
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 30.7 bits (66), Expect = 0.23
Identities = 17/78 (21%), Positives = 36/78 (46%)
Frame = +3
Query: 276 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 455
+ +YK +G T + HD ++ + + + ++T S D +W++GD G + L
Sbjct: 369 LRVYKVDGKAPVSTVSHA-HDNSIVALRYNLRISLLLTASSDTTVKLWSRGDAGAF-ECL 426
Query: 456 VLLRINRAATCVKWSPME 509
+ + C+ W+ E
Sbjct: 427 HVFSFSSPVNCIDWNLRE 444
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 30.3 bits (65), Expect = 0.31
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 309 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 422
K +L H+ +V +DW+P+ R+ + D+ +W+
Sbjct: 464 KMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIWS 501
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +3
Query: 267 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
+++V IY+ + L EH V+ ++W+ + ++ + SVD++A V+
Sbjct: 51 DSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDKSAKVF 101
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.31
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 288 KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
+K +W+ L+ HD + + W+ ++ +V+ +D + VW
Sbjct: 118 EKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 255 FSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 425
+S NN N+ Q ++L+ H V G+ +P I++CS D +W++
Sbjct: 376 YSSTNNGPQPLVGSQNEPLQKSSLIGHTRPVFGVSISPQKEFILSCSEDGFTRLWSK 432
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 29.9 bits (64), Expect = 0.41
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 282 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
+Y +G Q + H + I W+P++++ VT S + +W
Sbjct: 213 VYVFDGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKIW 258
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 264 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 443
++N ++ + G ++ +L H V + ++PN R + D YV+ DGK
Sbjct: 167 DDNSINFF--HGTPYRFNRSLRVHSKFVYDVRYSPNDERFASAGADGKVYVF----DGKT 220
Query: 444 ATTLVLLRINRAAT-CVKWSP 503
+ + ++ + + WSP
Sbjct: 221 GDQVYEIDAHKGSIFSISWSP 241
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 0.71
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 422
H VMG+ TN + +CS DR+ VW+
Sbjct: 249 HRDAVMGLAMRRGTNEMFSCSADRSIKVWS 278
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 0.94
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 324 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
L EH +++ + W+PN ++ T S D +W
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 458 NKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPH 348
NK S I SLSP ++ + N ++ +G+ +NPH
Sbjct: 408 NKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPH 444
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 354 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWS 500
+DW+ N N +V +++RN YVW D G + L + VKWS
Sbjct: 186 LDWS-NLN-VVAVALERNVYVW-NADSGS-VSALAETDESTYVASVKWS 230
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
H++ V + ++PN ++ VT S D + VW
Sbjct: 163 HEMEVRDVAFSPNDSKFVTASDDGSLKVW 191
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 366 PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL-LRINRAATCV 491
P +N IVTCS D ++W + + T+ L +++ ++ C+
Sbjct: 303 PPSNNIVTCSTDGLVHIWEPDMFSRPSETICLSSQVDSSSQCI 345
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWSPME 509
H+ + G+ W + ++ + D N +VW D + + L + AA + WSP +
Sbjct: 248 HEQEICGLQWDRSLGQLASGGNDNNLFVW----DYRSSRPLHKFEEHTAAVKAIGWSPHQ 303
Query: 510 TSLLS 524
+L+
Sbjct: 304 RGILA 308
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2
Query: 488 ASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFH 327
A S T N + P PI +L PD T++ + ++ + +G+ PHHS + H
Sbjct: 142 ADNSSSSTTSNPNVAP-PISTL-PDPVATISSSSSSHLDMGAIHPPHHSSLPPH 193
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 324 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 422
L+ H V G ++P+ +++CS D +A +W+
Sbjct: 375 LLSHSGPVYGTTFSPDNKYLLSCSEDASARLWS 407
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 NEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPN 371
N+ +IYK+ + WK+ L H + I WAP+
Sbjct: 192 NDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPS 226
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 410 LRLDSRR*WEMGNYSCSSAYQPSSDLREMVSHGN 511
LR D RR EM N+ C +PS + + GN
Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGN 45
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 324 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWS 500
L H V G++W N N + + D VW + ++ L + AA + WS
Sbjct: 370 LTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFEE----KPLYSFHNHIAAVKAITWS 425
Query: 501 PMETSLLS 524
P + +L+
Sbjct: 426 PHQRGILA 433
>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 569 FPSQNSKLISI*LLTRQQTCFHGRPFHASRCSVDTQKNKSSCPFPI 432
FPSQ + +S + TCFH +P H+S + S+ P+ +
Sbjct: 11 FPSQIKRCLSSSKYIQLATCFHDQP-HSSLMTFTYLPAGSAAPYEV 55
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 5.0
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -2
Query: 335 VFHKVVCLLPVISFLFVYVNFIIVW 261
+FH V +L ++ + +++N++ VW
Sbjct: 245 IFHPVTYILAIVVPINIFLNYLFVW 269
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = -2
Query: 410 SITVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLPVISF----LFVYVNFIIVW*EAI*L 243
+I ++T N V V I KV+ ++ LL + S L ++NF +++ + I
Sbjct: 109 NILQDKTSVN-VNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIILS 167
Query: 242 LSLFHA*HVIGAH 204
SLFH H+I H
Sbjct: 168 HSLFHISHLISFH 180
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
H LR+ + + P N ++ S+D++ VW
Sbjct: 546 HSLRIYSVLYEPERNICISGSMDKSIRVW 574
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 419 PDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLP 306
PD I R R+++ + I+PHHS+ + ++ +P
Sbjct: 472 PDSDICFTRRRSDSNRTWTVIDPHHSQSFDNDILAEIP 509
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 327 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 461
V H L ++ I + N + +DR VW D +W T LVL
Sbjct: 592 VHHQLDILKIAVSENYKTFASVGLDRCLVVW---DLRQWCTKLVL 633
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 554 YFEKENNWWVSKHIKKPIRSTVTSID 631
YF+++N W + K KK ++ ++TS+D
Sbjct: 30 YFDEDNIWDLDK-FKKNLKVSITSLD 54
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 737 HIRSRLIFDILDIGREDSYFEVSRASDEQNVIGMP 633
H++ RLIFD++ + + V++A+ V+G P
Sbjct: 649 HLQERLIFDLMALPNQAWENIVAQAAQNAQVLGDP 683
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 639 PNNILLVAGSADFKVRVFSAYIKDIED 719
P +LLVAG D +V Y+K++++
Sbjct: 260 PEYLLLVAGGYDIRVSENRRYLKELQE 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,023
Number of Sequences: 5004
Number of extensions: 70041
Number of successful extensions: 245
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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