Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00493
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15) 44 1e-04
SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16) 35 0.082
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 32 0.57
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 32 0.57
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 31 1.3
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27) 30 1.8
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23) 29 3.1
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029) 29 4.1
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 29 4.1
SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54) 29 4.1
SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006) 29 5.4
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21) 29 5.4
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13) 29 5.4
SB_30961| Best HMM Match : I-set (HMM E-Value=0) 28 7.1
SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013) 28 7.1
SB_55749| Best HMM Match : SRCR (HMM E-Value=0) 28 9.4
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15)
Length = 140
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +3
Query: 252 CFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPN----TNRIVTCSVDRNAYVW 419
C + + ++++ G W + L H V + WAPN T+ I +CS D +W
Sbjct: 10 CSGGGIDTLSMFRETGGQWVEEQKLEAHSDWVRDVAWAPNVGLPTSTIASCSQDCRVIIW 69
Query: 420 TQG-DDGKWATTLVLLRINRAATCVKWS 500
++ ++G+ ++ VL + N V WS
Sbjct: 70 SRNEEEGEGWSSKVLKKFNDVVWHVSWS 97
>SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16)
Length = 91
Score = 34.7 bits (76), Expect = 0.082
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 330 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATT 452
+H + + + + R+ TCS D++ VW G+DG+W T
Sbjct: 10 DHKDLIHDVSYDFHGRRMATCSSDQSVKVWDLGEDGEWRCT 50
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 294 EGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQ 425
E +W+ T N H V + WA P +++ +CS DR VW +
Sbjct: 43 EDGEWRCTANWKTHSGSVWKVTWAHPEFGQVLASCSFDRTVAVWEE 88
>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
Length = 874
Score = 31.9 bits (69), Expect = 0.57
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +3
Query: 264 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
+ N + +Y ++ NL H+ +V + W+ + ++I++C +D Y W
Sbjct: 252 HGNVIQLYSS--TTFENVGNLKGHNGKVRQVIWSQDDSKIISCGMDGAVYEW 301
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 333 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPME 509
H V +DW P TN + +CS+D + VW +G + A VKWSP
Sbjct: 203 HTSGVNRLDWNPVYTNLLASCSMDNSVRVWDTYLNGICVKSHTF--HGGAVKDVKWSPGG 260
Query: 510 TSLLS 524
LLS
Sbjct: 261 MQLLS 265
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +3
Query: 318 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 497
N+L HD V GI + R+V+ S DR +W +A L + CV
Sbjct: 826 NSLDGHDGHVRGIAITSDGRRLVSASQDRTLRIWNL---ETFAHVSTLRGHSETVYCVCC 882
Query: 498 SPMETSLLSGQE 533
SP + +SG E
Sbjct: 883 SPDDKFAISGSE 894
>SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 737
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 229 WNKDRSQIASHQTIMKFTYTKRKEMTGSKQTTLWNTTLE 345
W K +S +++ QT + TKR +TG K T N T+E
Sbjct: 92 WRKGQSCVSNPQTRTHRSNTKRGVITGQKSNTRSNLTME 130
>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
Length = 592
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = -2
Query: 548 LISI*LLTRQQTCFHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGV 369
LI I ++ + F G P + + CP+ S SP V+ T RTR+ T+
Sbjct: 371 LIMIMVIDSRYLLFPGLPECHHSPATTNMRRAIMCPYAP-STSPRVTSTTFRTRHRTLSA 429
Query: 368 GSPINPHHSKVVFHKVVCL 312
+ S V H++ CL
Sbjct: 430 RFFSDVPESHVYVHRISCL 448
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 306 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
W+ + L +H V+ + W+P+ + + + SVD +W
Sbjct: 78 WRCVHTLRQHSGDVLDLAWSPDDSFLASGSVDNTVTIW 115
>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Frame = +3
Query: 264 NNNEVHIYK----KEGNDWKQTNNL---VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 422
N N + ++K K+G T V H ++ I A N I++CS D +W
Sbjct: 168 NGNTIRVFKVSKKKDGTGTTITGEFDFPVRHKAEIINIAVASNGKYIMSCSKDTTIIIWD 227
Query: 423 QGDDGKWATTLVLLRINRA 479
G+ TL L+IN +
Sbjct: 228 L--KGEVLATLDTLQINNS 244
>SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)
Length = 437
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 321 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
+L H L VM +D + ++ IVT S D+N +W
Sbjct: 241 SLYGHKLPVMAMDISSDSTLIVTGSADKNIKIW 273
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +3
Query: 294 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 434
+ N W H + +DW N N +CS D+ +V G D
Sbjct: 215 DANTWDVKQQFAFHQAPTLDVDW-QNNNSFASCSTDKLIHVCRLGLD 260
>SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)
Length = 498
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 521 QQTCFHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSI 405
Q HG H + V T SCPF I+ ++P++ +
Sbjct: 293 QAASLHGDMSHTQKQGVYTAIRDPSCPFKILYVTPEILV 331
>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 261 PNNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
P ++E+ KKE N KQ H RV+G++ + + +VT S D + VW
Sbjct: 827 PPDDEMTEKKKEPKNVIKQVVCWRAHLTRVVGVEHVDSADAVVTASTDLSVRVW 880
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 327 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
V H V ++P+ + V+CS DR VW
Sbjct: 591 VGHTQEVFSCSFSPDDTKAVSCSADRTVKVW 621
>SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54)
Length = 275
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 455 CSSAYQPSSDLREMVSHGNKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTV 619
C + YQP S L E +SHG+++ + +R + + ++ ++ PIR +
Sbjct: 93 CQAGYQPVSRLCEGLSHGSRYVLRVSSRNGVTSFADGSAIRFIEVNVTLPIREAL 147
>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
Length = 1103
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 327 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 431
V+ ++ +M I W+ +T+RI+T + +W+ G+
Sbjct: 545 VKGNVAIMSIQWSKDTSRILTLNSQGTVELWSVGN 579
>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
Length = 447
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 294 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 434
+ N WKQ +L H L V I ++ + RI++ S DR+ V+ D
Sbjct: 235 DANIWKQVCSLPGHSLTVTQIAFSHSGQRILSVSRDRSWAVFRLRQD 281
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 264 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRI 383
+NNEV + K D +NN VE+D + ID + N +
Sbjct: 1609 SNNEVELAKSTNIDKLVSNNEVEYDAKSTNIDKLVSNNEV 1648
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 330 EHDLRVMGIDWAPNT--NRIVTCSVDRNAYVWTQGDDG 437
EHD V + W+ N + +CS DR +W + G
Sbjct: 3103 EHDGPVWQVSWSHPMFGNLLASCSYDRKVIIWKESSSG 3140
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 279 HIYKKEGND---WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
HI E ++ W + L H V + W+P+ ++++ SVD +A +W
Sbjct: 158 HILDDENDNLETWTVSKMLRGHIEDVYDLAWSPDGTQLLSGSVDNSAIIW 207
>SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13)
Length = 232
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/79 (25%), Positives = 31/79 (39%)
Frame = +3
Query: 264 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 443
N+N++ +Y E D + H ++ +D + +IVT S D VW D
Sbjct: 155 NSNQLRLYNLETLDCRMVEG---HSKMILCLDVCADGTKIVTGSKDHTVRVWDVSDCSNP 211
Query: 444 ATTLVLLRINRAATCVKWS 500
V A + V WS
Sbjct: 212 RCLAVGNGHTHAVSGVAWS 230
>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
Length = 1018
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 434 IISLSPDVSITVNRTRNNTV 375
I ++SPDVS+T+NRT + T+
Sbjct: 671 ITAISPDVSVTINRTDSVTL 690
>SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
Length = 507
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -2
Query: 497 PFHASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVV 318
P + S+ ++ + ++C F + L+ + +RT + + G PINPH ++ +V
Sbjct: 428 PPYISQSTLLGRNGSNACTFISLILAHSYITSASRT-SIQLSRGPPINPHWLSMMLSAIV 486
Query: 317 C 315
C
Sbjct: 487 C 487
>SB_55749| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1224
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 642 WDAQSIDVTVERMGF-LICLDTHQLFSFSK*QIDINLAPDPTAN 514
WD++ DV MGF +C+DT F+ + + LA T+N
Sbjct: 644 WDSKGADVVCRMMGFPAMCVDTDYSTQFTIVSV-VRLADGSTSN 686
>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 369 NTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETSLLSGQELD 539
N + + + S D Y+W ++ A VL R CV W+P+ S+++ D
Sbjct: 216 NQDFLASGSEDHQVYIWHVKNERPIA---VLCGHTRTVNCVTWNPLVPSMMASASDD 269
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 324 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 422
+ +HD +++ W P V+ S DR A +WT
Sbjct: 1273 VAQHDDKMIQCRWHPFLMAFVSSSADRTARLWT 1305
>SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1756
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -2
Query: 575 NYFPSQNSKLIS-I*LLTRQQTCFHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSITV 399
NY P NS + I LL Q FHG+ RC T+ N F + S S +V
Sbjct: 1384 NYSPPHNSSNFNLISLLHGVQGMFHGKLKGIVRCFSTTELNLLDVKFMSVKFSEKQSESV 1443
Query: 398 NR 393
R
Sbjct: 1444 RR 1445
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,859,775
Number of Sequences: 59808
Number of extensions: 514333
Number of successful extensions: 1300
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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