Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00493
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 153 1e-37
AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical ... 45 7e-05
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 38 0.010
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 37 0.013
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 36 0.023
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 35 0.071
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 34 0.094
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 34 0.12
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 34 0.12
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 32 0.38
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 31 0.66
AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical ... 31 1.2
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 30 1.5
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 30 1.5
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 30 1.5
U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20 pr... 29 3.5
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical ... 28 6.2
AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical ... 28 6.2
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 28 6.2
Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 28 8.2
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 153 bits (371), Expect = 1e-37
Identities = 71/165 (43%), Positives = 97/165 (58%)
Frame = +3
Query: 258 SPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 437
S ++N++HI++ DW+ + L EHDL V G+DW TNRIV+CS D+NA+VWT D
Sbjct: 32 SASSNDIHIFEWRNGDWQSIHTLSEHDLPVTGLDWGTKTNRIVSCSQDKNAFVWT-FDKN 90
Query: 438 KWATTLVLLRINRAATCVKWSPMETSLLSGQELD*YQFAILRRKIIGGCLSILRSPFVRL 617
W LVL+R NRAAT VKWSP+E G ++ ++ P
Sbjct: 91 VWKPELVLVRFNRAATYVKWSPLENKFAVGSGAKLVSVCYYEKENDWWVSKQIKKPIRST 150
Query: 618 *HLLIGHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKL 752
L H NN+LL GS DFK RVFSAY+K+++++P PN WG K+
Sbjct: 151 VTCLDWHSNNVLLAVGSCDFKCRVFSAYVKEVDEKPSPNPWGQKM 195
Score = 86.6 bits (205), Expect = 2e-17
Identities = 35/44 (79%), Positives = 41/44 (93%)
Frame = +2
Query: 509 NKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWAS 640
NKFAVGSGA+L+S+CY+EKEN+WWVSK IKKPIRSTVT +DW S
Sbjct: 115 NKFAVGSGAKLVSVCYYEKENDWWVSKQIKKPIRSTVTCLDWHS 158
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +1
Query: 211 PITCHAWNKDRSQIA 255
PITCHAWNKDR+QIA
Sbjct: 16 PITCHAWNKDRTQIA 30
>AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical
protein Y18D10A.9 protein.
Length = 337
Score = 44.8 bits (101), Expect = 7e-05
Identities = 21/83 (25%), Positives = 42/83 (50%)
Frame = +3
Query: 276 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 455
V +Y++E ++ + N L H+ V ++ + + TCS D++ + W Q +D ++ +
Sbjct: 91 VVVYQQEDGEFAEVNKLEGHESEVKCAVFSKSDEFLATCSRDKSVWFWQQDEDEDFSVSS 150
Query: 456 VLLRINRAATCVKWSPMETSLLS 524
+L + V W P E L+S
Sbjct: 151 ILQPHTQDVKQVAWHPTEDLLVS 173
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +3
Query: 318 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 497
N+ H +V+ + W+P+ R+ T S+D + +W G+ + + V+W
Sbjct: 519 NSWTFHTSKVLTVAWSPDNQRLATGSIDTSVIIWDMKKPGEHPVIIKGAHPMSSVNVVRW 578
Query: 498 SPMETSLLSGQE 533
T + +GQ+
Sbjct: 579 LDETTVVSAGQD 590
Score = 31.1 bits (67), Expect = 0.88
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 327 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
V H + + W+P+ +RI T S D++ +W
Sbjct: 234 VAHTGSIFALAWSPDQSRIATASADKSVKIW 264
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 300 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 425
++W + + ++ H L V I W P+ R++T S DR A ++T+
Sbjct: 596 SNWSKKSEIIGHQLTVTQIAWNPSGTRLLTVSRDRTAKLYTE 637
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 36.3 bits (80), Expect = 0.023
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 285 YKKEGNDWKQTN-NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 461
+K +D + N NL H + + W + +++ +C YVW + DD +W+ LV
Sbjct: 51 FKPTPDDLTRYNFNLRGHHNAIRMVTWNKSQSKLASCDASGIIYVWVRNDD-RWSVELVN 109
Query: 462 LRINRAATCVKWSPMETSLL 521
R + + + WSP S L
Sbjct: 110 DRGVKVSD-LSWSPCGGSAL 128
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 34.7 bits (76), Expect = 0.071
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 351 GIDWAP-NTNRIVTCSVDRNAYVWTQGDDGKWAT-TLVLLRINRAATCVKWSPMETSLLS 524
G+ W+ T + T + + Y+W + G+WA L ++ + WSP ET LL+
Sbjct: 233 GLAWSSLKTGDLATGDIIKKIYLWQMKEGGQWAVGANPLTGHKKSVEDLAWSPTETGLLA 292
Query: 525 GQELD 539
D
Sbjct: 293 SCSAD 297
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 300 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC----SVDRNAYVWTQGDDGKWATTL 455
+ +KQ V+ D V G++WAP ++ + D+NA V+ + + GKW+ T+
Sbjct: 51 SSYKQFGLNVQPDNSVKGLEWAPAAEKLALIGDFNNWDQNANVYKKEEHGKWSITV 106
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +3
Query: 315 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK 494
TN+ H +V + W+P+ R+ T S+D + VW + + V
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588
Query: 495 WSPMETSLLSGQE 533
W T + +GQ+
Sbjct: 589 WLNETTIVSAGQD 601
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 327 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +3
Query: 315 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK 494
TN+ H +V + W+P+ R+ T S+D + VW + + V
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588
Query: 495 WSPMETSLLSGQE 533
W T + +GQ+
Sbjct: 589 WLNETTIVSAGQD 601
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 327 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 306 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 431
W+ L HD R++ +D +P+ + + + DR +W Q D
Sbjct: 454 WQPLRQLQGHDTRILCVDISPDGQWMCSSAFDRTFKLWAQSD 495
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 306 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 422
W + +L +H V G+ + N +VTCS+D++ V++
Sbjct: 453 WSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFS 491
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 636 HPNNILLVAGSADFKVRVFSA 698
HP+NI ++ SAD +RV+SA
Sbjct: 260 HPDNITAISASADSHIRVWSA 280
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = +3
Query: 336 DLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETS 515
D + G+ +AP + T S D A VW D ++ VL C+ W P +
Sbjct: 217 DEAIRGLAFAPTDVKFATASDDGTARVW---DFARYTEERVLRGHGAEVRCIDWHPTKGL 273
Query: 516 LLSGQELD*YQFAILRRKIIGGCLSILR 599
+ +G D Q + G CL+ L+
Sbjct: 274 IATGSR-DTQQPVKIWDPKSGSCLATLQ 300
>AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical
protein Y43F4B.4 protein.
Length = 363
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 246 SNCFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVW 419
+ C S + K +GN W+++ + H V + WA P +IV TCS DR +W
Sbjct: 33 ATCASDMTMAIWDRKPDGN-WRRSAHWKCHGGAVWRVIWAHPEFGQIVATCSYDRTIVIW 91
Query: 420 TQ 425
+
Sbjct: 92 EE 93
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 354 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 443
+ + P+ R+ TC+ D +W + DG W
Sbjct: 23 VSFDPHGRRMATCASDMTMAIWDRKPDGNW 52
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 327 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 267 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
NN +Y N K +L H L V +D AP++ VT SVD++ VW
Sbjct: 565 NNTCSVYFV--NTLKFFVSLYGHSLPVTCVDIAPSSKLCVTGSVDKSVKVW 613
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 431 ISLSPDVSITV-NRTRNNTVGVGS-PINPHHSKVVFHKVVCLLP 306
++ P ++ V +T+ N +G + NPHH + FH++V +P
Sbjct: 250 LATMPSCNVQVLGKTKKNLIGFSTVSTNPHHGFIYFHQLVQKMP 293
>U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20
protein family) homologprotein 1 protein.
Length = 507
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 267 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
N++V I + + W N H V ++W+ + N V+ S DR A +W
Sbjct: 295 NHDVRISQHVVSSWGGDNG---HCRDVTALEWSADENMCVSGSSDRTAKIW 342
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical protein
F36D3.5 protein.
Length = 1152
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 279 HIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 434
HI+ E D K TN+ +E + + APNT ++ D N + T D
Sbjct: 931 HIWMDERTDNKITNDFMEKFQAITSDEAAPNTTHVIV-KTDENGVLETDDLD 981
>AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical
protein H32C10.3 protein.
Length = 783
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -1
Query: 372 CWEPNQSPSL*GRVPQGCLFASSHFLPFCICELHYCLVRSNLTSILVPCMTCY 214
CW P S S C+ H P+ +H C+ R NL + + C+T +
Sbjct: 546 CWIPKTSSSHHCSQCDKCVDGFDHHCPW----IHKCVYRKNLRAFVFFCLTIF 594
>AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical
protein Y54F10BM.3 protein.
Length = 745
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = +3
Query: 285 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLL 464
+KK N+ ++ VE R G D +++ ++D Y G GK A +
Sbjct: 290 FKKPQNELRENEVWVE---RQTGPDIDKDSDPKTENALDEQDYQLEDGWHGKSALNITRK 346
Query: 465 RINRAATCVKWSPMETSLLSGQELD 539
+ T + +SP S++ G+E D
Sbjct: 347 EFKKLFTKMSYSPSMCSIIPGKERD 371
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Frame = +3
Query: 285 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNT------NRIVTCSVDRNAYVWTQGD-DGKW 443
Y N+W + H+ V + WAP + R+V+ D+N +W D +W
Sbjct: 135 YDNSSNEWISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDKNVKIWAFDDATNEW 194
Query: 444 ATTLVLLRINRAATCVKWSPM 506
L W P+
Sbjct: 195 ILEKTLAGHTDFVREAAWCPV 215
>Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical
protein ZK1307.6 protein.
Length = 702
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/66 (25%), Positives = 25/66 (37%)
Frame = +3
Query: 324 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 503
L H V G+ W+P+ + + D VW + T + N A + WSP
Sbjct: 518 LTNHRQEVCGLKWSPDKQLLASGGNDNQLLVWNLRRNEPIQT---YTQHNAAVKALAWSP 574
Query: 504 METSLL 521
LL
Sbjct: 575 HHHGLL 580
>Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical
protein R01H10.3d protein.
Length = 495
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 333 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 437
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical
protein R01H10.3c protein.
Length = 607
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 333 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 437
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical
protein R01H10.3b protein.
Length = 538
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 333 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 437
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 333 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 437
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,917,168
Number of Sequences: 27780
Number of extensions: 394695
Number of successful extensions: 1045
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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