Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00493
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 122 3e-28
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 122 3e-28
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 122 3e-28
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 42 6e-04
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 41 8e-04
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 40 0.001
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 37 0.012
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 36 0.029
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 34 0.088
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 34 0.088
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 34 0.088
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 33 0.15
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 33 0.15
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.15
At5g40350.1 68418.m04895 myb family transcription factor (MYB24)... 32 0.36
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 32 0.36
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 32 0.36
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 32 0.47
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 32 0.47
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 32 0.47
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 31 0.62
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 31 0.62
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 31 0.82
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.82
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 31 0.82
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 31 0.82
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 31 1.1
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 30 1.4
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 30 1.4
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 30 1.9
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 30 1.9
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 2.5
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 29 3.3
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 29 3.3
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 3.3
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 29 3.3
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 29 4.4
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 28 5.8
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 28 7.7
At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containi... 28 7.7
At3g18980.1 68416.m02409 F-box family protein contains Pfam:PF00... 28 7.7
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 28 7.7
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 122 bits (293), Expect = 3e-28
Identities = 63/153 (41%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Frame = +3
Query: 261 PNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 437
PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ +
Sbjct: 29 PNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGA 87
Query: 438 KWATTLVLLRINRAATCVKWSPMETSLLSGQELD*YQFAILRRKIIGGCLSILRSPFVRL 617
+W TLV+LR+NRAA CV+WSP E G ++ ++R
Sbjct: 88 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESS 147
Query: 618 *HLLIGHPNNILLVAGSADFKVRVFSAYIKDIE 716
+ HPNN+LL S D K RVFS +IK ++
Sbjct: 148 VTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180
Score = 69.3 bits (162), Expect = 3e-12
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +2
Query: 509 NKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDW 634
NKFAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ W
Sbjct: 112 NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAW 153
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 122 bits (293), Expect = 3e-28
Identities = 63/153 (41%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Frame = +3
Query: 261 PNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 437
PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ +
Sbjct: 29 PNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGA 87
Query: 438 KWATTLVLLRINRAATCVKWSPMETSLLSGQELD*YQFAILRRKIIGGCLSILRSPFVRL 617
+W TLV+LR+NRAA CV+WSP E G ++ ++R
Sbjct: 88 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESS 147
Query: 618 *HLLIGHPNNILLVAGSADFKVRVFSAYIKDIE 716
+ HPNN+LL S D K RVFS +IK ++
Sbjct: 148 VTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180
Score = 69.3 bits (162), Expect = 3e-12
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +2
Query: 509 NKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDW 634
NKFAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ W
Sbjct: 112 NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAW 153
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 122 bits (293), Expect = 3e-28
Identities = 63/153 (41%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Frame = +3
Query: 261 PNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 437
PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ +
Sbjct: 29 PNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGA 87
Query: 438 KWATTLVLLRINRAATCVKWSPMETSLLSGQELD*YQFAILRRKIIGGCLSILRSPFVRL 617
+W TLV+LR+NRAA CV+WSP E G ++ ++R
Sbjct: 88 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESS 147
Query: 618 *HLLIGHPNNILLVAGSADFKVRVFSAYIKDIE 716
+ HPNN+LL S D K RVFS +IK ++
Sbjct: 148 VTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180
Score = 69.3 bits (162), Expect = 3e-12
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +2
Query: 509 NKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDW 634
NKFAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ W
Sbjct: 112 NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAW 153
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/81 (23%), Positives = 39/81 (48%)
Frame = +3
Query: 282 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 461
I+K G++++ + L H+ V + W + + + TCS D++ ++W + ++ VL
Sbjct: 100 IWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVL 159
Query: 462 LRINRAATCVKWSPMETSLLS 524
+ V+W P L S
Sbjct: 160 TGHTQDVKMVQWHPTMDVLFS 180
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 294 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV-WTQGDDGKWATTLVLLRI 470
EGN++ L H V + W P + + +CS D V W++ DDG++ L
Sbjct: 149 EGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEYQCVQTLGES 208
Query: 471 NRAATCVKWS 500
N + WS
Sbjct: 209 NNGHSSTVWS 218
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 291 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTCSV-DRNAYVWTQGDDGKWATTLV 458
KEGN W Q + +H + V I WAP+ + + C D N V++ DG W TT +
Sbjct: 86 KEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSARADGGWDTTKI 145
Query: 459 LLRINRAATCVKWSP 503
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 291 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 461
KEG W+ T L + V + W+ N + + N VW + DG+W V+
Sbjct: 245 KEGEQWEGTV-LKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEWEQVTVV 300
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +3
Query: 324 LVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 497
L H V + WA P ++ +CS D +W +G+ +W V + + W
Sbjct: 52 LTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAW 111
Query: 498 SPMETSL 518
+P E L
Sbjct: 112 APHELGL 118
Score = 31.5 bits (68), Expect = 0.62
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 267 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 428
++ V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVIIWTIG 244
Query: 429 DDGKWATTLVLLRINRAATCVKWS 500
+G+ VL V WS
Sbjct: 245 KEGEQWEGTVLKDFKTPVWRVSWS 268
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 291 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTC-SVDRNAYVWTQGDDGKWATTLV 458
KEGN W Q + +H V I WAP+ + + C S D N V+T DG W T+ +
Sbjct: 86 KEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRI 145
Query: 459 LLRINRAATCVKWSP 503
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +3
Query: 309 KQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAA 482
+Q L H V + WA P I+ +CS D +W +G+ +W V +
Sbjct: 47 QQLATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSV 106
Query: 483 TCVKWSPMETSL 518
+ W+P + L
Sbjct: 107 NSIAWAPHDIGL 118
Score = 33.1 bits (72), Expect = 0.20
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 267 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 428
+N V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVIIWTVG 244
Query: 429 DDGKWATTLVLLRINRAATCVKWS 500
+G+ VL V WS
Sbjct: 245 KEGEQWEGKVLKDFMTPVWRVSWS 268
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 291 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 443
KEG W + L + V + W+ N + + N VW + DG+W
Sbjct: 245 KEGEQW-EGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGEW 294
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 37.1 bits (82), Expect = 0.012
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 437
H + + W+P++ R++T S D++A VW +DG
Sbjct: 95 HKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAEDG 129
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 267 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
N E ++ +E K NN++ H R+ + W+PN + T S+D V+
Sbjct: 377 NREAVVWDRETKQVK-LNNMLFHTARINSLAWSPNNKMVATGSIDTCVIVY 426
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.9 bits (79), Expect = 0.029
Identities = 23/64 (35%), Positives = 29/64 (45%)
Frame = +3
Query: 336 DLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETS 515
DL+V +DW P NRIV+ S D VW K T + L TC +SP S
Sbjct: 3 DLQVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQS 59
Query: 516 LLSG 527
+ G
Sbjct: 60 VACG 63
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 34.3 bits (75), Expect = 0.088
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +3
Query: 324 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 503
LV H V + ++ + + T S D A +W DD K L + V WSP
Sbjct: 220 LVAHKNEVWFVQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSP 279
Query: 504 METSLLS 524
+T LL+
Sbjct: 280 DDTKLLT 286
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 34.3 bits (75), Expect = 0.088
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +3
Query: 282 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW--TQGDDGKWATTL 455
+++ D + + L H+ V + W + + + TC D++ ++W +D ++ T
Sbjct: 74 VWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIA 133
Query: 456 VLLRINRAATCVKWSPMETSLLS 524
VL + V W P L S
Sbjct: 134 VLTGHSEDVKMVLWHPTMDVLFS 156
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 282 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLV 458
I +E +++ L H V + W P + + +CS D +W ++ +DG +
Sbjct: 121 IQPEEDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQT 180
Query: 459 LLRINRAATCVKWS 500
L +N + WS
Sbjct: 181 LSELNNGHSSTVWS 194
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 KQTNNLVEHDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQ 425
++ L H RV + W P + ++ +CS D+ +W Q
Sbjct: 11 EEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQ 50
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 34.3 bits (75), Expect = 0.088
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMET 512
H + W P ++ T S D+ +W+ +D + LVL + T V W+ ++
Sbjct: 695 HKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDARIKQILVLPPFGSSVTAVAWTGLDR 754
Query: 513 SLLSG 527
+ SG
Sbjct: 755 NEKSG 759
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +3
Query: 246 SNCFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 422
S+C + + + I+ E WK L H L V ++++ + +++ S DR+ V++
Sbjct: 617 SSCKAQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFS 675
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMET 512
H +V +DW P NRIV+ S D VW K T + L TC +SP
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQ 120
Query: 513 SLLSG 527
S+ G
Sbjct: 121 SVACG 125
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMET 512
H +V +DW P NRIV+ S D VW K T + L TC +SP
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCA-FSPNGQ 120
Query: 513 SLLSG 527
S+ G
Sbjct: 121 SVACG 125
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 461
H + + W+P+ +++T S D++A +W D+G + L
Sbjct: 231 HKGSIYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGSLNTTL 273
>At5g40350.1 68418.m04895 myb family transcription factor (MYB24)
similar to Myb26 GI:1841475 from [Pisum sativum]
Length = 214
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/47 (27%), Positives = 30/47 (63%)
Frame = +2
Query: 440 MGNYSCSSAYQPSSDLREMVSHGNKFAVGSGARLISICYFEKENNWW 580
M YS +++YQ +S++ + +++GN + SG+ ++ + + E N+W
Sbjct: 155 MDMYSPTTSYQHASNINQQLNYGN-YVPESGSIMMPLSVDQSEQNYW 200
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 318 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 497
+ LV H V G+ W+ + + + D VW ++ L L A + W
Sbjct: 292 SKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVW---NNHSQQPILKLTEHTAAVKAITW 348
Query: 498 SPMETSLLS 524
SP ++SLL+
Sbjct: 349 SPHQSSLLA 357
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 32.3 bits (70), Expect = 0.36
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +3
Query: 303 DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
+WK L H V+ ++W+P+ + + + S+D ++W
Sbjct: 107 NWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIW 145
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Frame = +3
Query: 267 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD----- 431
+N VHI+ T L H V G+ W P + I + S D+ +W D
Sbjct: 139 DNTVHIWNMRTG--MCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAH 196
Query: 432 --DGKWATTL 455
DG WA +L
Sbjct: 197 RTDGHWAKSL 206
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 282 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 458
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 34 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 90
Query: 459 LLRINRAATCVKWSPM 506
L V W P+
Sbjct: 91 LDAHCHYVQGVAWDPL 106
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 282 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 458
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 459 LLRINRAATCVKWSPM 506
L V W P+
Sbjct: 150 LDAHCHYVQGVAWDPL 165
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 282 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 458
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 459 LLRINRAATCVKWSPM 506
L V W P+
Sbjct: 150 LDAHCHYVQGVAWDPL 165
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 503
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 265 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 324
Query: 504 METSLLS 524
+ +LL+
Sbjct: 325 FQANLLA 331
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 503
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 255 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 314
Query: 504 METSLLS 524
+ +LL+
Sbjct: 315 FQANLLA 321
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 31.1 bits (67), Expect = 0.82
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 333 HDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQGD---DGKWATTLVLLRINRAATCVKWS 500
HD + +DW P+ N ++ T S D V+ + + +G + A CV+WS
Sbjct: 325 HDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWS 384
Query: 501 PMETSLLSGQELD 539
P ++S+ D
Sbjct: 385 PDKSSVFGSSAED 397
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 297 GNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT-QGDD 434
G D+ +L H+ +V +D +++ I T S DR +WT G+D
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGND 541
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 31.1 bits (67), Expect = 0.82
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Frame = +3
Query: 318 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 497
+ L H +V + + +++ ++T S D+ +W DG +A L + V
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTV 317
Query: 498 SPMETSLLSGQELD*YQFAILRRKIIGGCLSILRSPFVRL*HLLIG-HPNNILLVAGSAD 674
P +S + F L G CL+ + + + HP+ ++L G++
Sbjct: 318 HPTNKYFVSASLDGTWCFYDLSS---GSCLAQVSDDSKNVDYTAAAFHPDGLILGTGTSQ 374
Query: 675 FKVRVF 692
V+++
Sbjct: 375 SVVKIW 380
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 31.1 bits (67), Expect = 0.82
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Frame = +3
Query: 318 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 497
+ L H +V + + +++ ++T S D+ +W DG +A L + V
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTV 317
Query: 498 SPMETSLLSGQELD*YQFAILRRKIIGGCLSILRSPFVRL*HLLIG-HPNNILLVAGSAD 674
P +S + F L G CL+ + + + HP+ ++L G++
Sbjct: 318 HPTNKYFVSASLDGTWCFYDLSS---GSCLAQVSDDSKNVDYTAAAFHPDGLILGTGTSQ 374
Query: 675 FKVRVF 692
V+++
Sbjct: 375 SVVKIW 380
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 312 QTNNLVE-HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 488
QT ++E H V + ++ N + + S D+ A +W DG + L+ ++
Sbjct: 265 QTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIA 324
Query: 489 VKWSPMETSLLS 524
+ WSP + +L+
Sbjct: 325 ILWSPDDRQVLT 336
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +3
Query: 309 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 488
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 489 VKWSPME 509
V+++P++
Sbjct: 402 VQFNPVD 408
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +3
Query: 309 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 488
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 489 VKWSPME 509
V+++P++
Sbjct: 402 VQFNPVD 408
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +3
Query: 309 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 488
K L EH + I ++P+ R+ T S D+ VW D K + + + T
Sbjct: 684 KPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDA--DNKGYSLRTFMGHSSMVTS 741
Query: 489 VKWSPMETSLLSGQELD 539
+ + P++ L+ + D
Sbjct: 742 LDFHPIKDDLICSCDND 758
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 318 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT 449
+ L H +V I + +T+ ++T S D+ +W +DG + +
Sbjct: 258 STLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTS 301
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 330 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 455
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 548 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 589
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 330 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 455
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 330 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 455
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 330 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 455
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 330 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 455
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Frame = +3
Query: 300 NDWKQTNNLVE----HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 467
ND + +++VE H V G+ W+ + N+ + D ++W + T L R
Sbjct: 236 NDVRIRSSIVETYLGHTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSKQTRQWLHR 295
Query: 468 INRAATCVK---WSPMETSLLS 524
V+ W P + SLL+
Sbjct: 296 FEEHTAAVRALAWCPFQASLLA 317
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 29.1 bits (62), Expect = 3.3
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Frame = +3
Query: 174 NGTNVNFW*LMRADNMSCMEQ--------G*KSNCFSPNNNEVHIYKKEGNDWKQ-TNNL 326
+GT V W ++R N+ ME S+ S + + I +++ + + L
Sbjct: 230 SGT-VQIWDVLRCKNIRTMEGHRLRVGALAWSSSVLSSGSRDKSILQRDIRTQEDHVSKL 288
Query: 327 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---W 497
H + G+ W+ + + + D +VW Q +T +LR A VK W
Sbjct: 289 KGHKSEICGLKWSSDNRELASGGNDNKLFVWNQ------HSTQPVLRFCEHAAAVKAIAW 342
Query: 498 SPMETSLLS 524
SP LL+
Sbjct: 343 SPHHFGLLA 351
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 282 IYKKEGN--DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 419
+Y+K+G+ + + L H V + ++PN+ +I+T S D + VW
Sbjct: 269 VYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVW 316
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/77 (23%), Positives = 37/77 (48%)
Frame = +3
Query: 309 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 488
K +L H ++ + W+ + +++ S+D+ +W D + T L L N TC
Sbjct: 497 KPVCSLKGHLDAILDLSWS-KSQLLLSSSMDKTVRLW----DIETKTCLKLFAHNDYVTC 551
Query: 489 VKWSPMETSLLSGQELD 539
+++SP++ + LD
Sbjct: 552 IQFSPVDENYFLSGSLD 568
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 255 FSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 434
F+ ++ + IY + + + H V + W P + + +CS D A +W +
Sbjct: 421 FATSSTDSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIW----N 476
Query: 435 GKWATTLVLLRIN-RAATCVKWSP 503
K +T + LR + + ++WSP
Sbjct: 477 IKQSTFVHDLREHTKEIYTIRWSP 500
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 354 IDWAPNTNRIVTCSVDRNAYVW 419
+DW PN N I T S D+ +W
Sbjct: 505 VDWHPNCNYIATGSSDKTVRLW 526
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +3
Query: 327 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---W 497
V H V G+ W+ + ++ + D ++W + T L R V+ W
Sbjct: 233 VGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAW 292
Query: 498 SPMETSLLS 524
P + SLL+
Sbjct: 293 CPFQASLLA 301
>At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 657
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 702 IKDIEDQPGPNVWGSKL 752
++D+ +PGP VWGS L
Sbjct: 445 VQDMRTEPGPKVWGSLL 461
>At3g18980.1 68416.m02409 F-box family protein contains Pfam:PF00646
F-box domain ; contains TIGRFAM TIGR01640: F-box protein
interaction domain ; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 415
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 213 DNMSCMEQG*KSNCFSPNNNEVHIYKKEGND-WKQT 317
+N SC ++ K CF PN + IY+ +D W +T
Sbjct: 160 ENNSCSKKIYKILCFYPNGQDTEIYELNYSDRWTRT 195
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +3
Query: 333 HDLRVMGIDWAPNT-NRIVTCSVDRNAYVWTQGD---DGKWATTLVLLRINRAATCVKWS 500
HD + +DW P+ N I+T S D ++ + +G + A CV+WS
Sbjct: 336 HDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWS 395
Query: 501 PMETSLLSGQELD 539
P ++S+ D
Sbjct: 396 PDKSSVFGSSAED 408
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,838,860
Number of Sequences: 28952
Number of extensions: 364454
Number of successful extensions: 1119
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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