Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00491
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 136 1e-32
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 43 2e-04
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.004
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 3.0
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_49367| Best HMM Match : AAA (HMM E-Value=0) 29 3.0
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32) 29 3.9
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 3.9
SB_8206| Best HMM Match : Kunitz_legume (HMM E-Value=3) 29 5.2
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 6.8
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 9.0
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 9.0
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 9.0
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 9.0
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 9.0
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 9.0
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_377| Best HMM Match : IQ (HMM E-Value=0.0002) 28 9.0
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 136 bits (330), Expect = 1e-32
Identities = 60/81 (74%), Positives = 70/81 (86%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 190
EA+PGDNVGFNVKNVSVK+++RG VAGD KNNPPK FTAQVIV+NHPG+I GY+PV
Sbjct: 160 EALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPV 219
Query: 191 LDCXTAHIACKFAEIKEKVDR 253
LDC TAHIACKF ++ EK+DR
Sbjct: 220 LDCHTAHIACKFDKLLEKIDR 240
Score = 99 bits (238), Expect = 2e-21
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 435
+GK E NPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 242 SGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVD 301
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 256 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 393
TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 500 TGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 307 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 423
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 202 HCPHCLQICRNQRKS*PSTGKSTEVNPKSIKSGDAAIVNLVPSKP 336
HC + I + + K+ ++ PK++ SGD ++VP++P
Sbjct: 68 HCIYLFHIAKKLEVKDSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -2
Query: 671 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 531
+QI+Y+ Y KI +H++ K RK + L FFPS H + +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355
>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
Length = 976
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 164 QISNGYTPVLDCXTAHIACKFAEI-KEKVDRLLVNLLKSTQN 286
Q GYTP +D T+H+ ++ E ++K + +++LK QN
Sbjct: 436 QFRKGYTPDIDELTSHLQTRYGEYNRKKRNSFRLSVLKVYQN 477
>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
Length = 991
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -3
Query: 247 NFFFDFCKFAGNVGSVAIQYWCVTV*DLTRMVKHNDLSCKICSTLRWVVFG 95
+++ D+C F G V + ++W V ++ HN + K+ S + V G
Sbjct: 148 DYYLDYCYFMGEVSTTNDEFWSAEV-----LINHNPCTLKLDSGSKVTVVG 193
>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
Length = 495
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 434 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 336
LT+L PT L RT +PR G W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441
>SB_8206| Best HMM Match : Kunitz_legume (HMM E-Value=3)
Length = 504
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 159 LVKSQTVTHQYWIATLPTLPANLQKSKKK 245
+++ + + HQ +A LPT PA +QK K+K
Sbjct: 263 IIRKRNIFHQ--LANLPTDPATIQKPKRK 289
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 419 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 324
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 313 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 402
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)
Length = 1376
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 260 VNLLKSTQNPSSLEMQPLS-TWYLPSLYV*SPSRNSHPSVVLLSVT 394
V+LLK+ ++P + +P S TW +P + V PS + P + ++S +
Sbjct: 542 VSLLKTGKHPDK-QTEPCSRTWDIPEIRVTRPSIGTIPEIRVISAS 586
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,244,898
Number of Sequences: 59808
Number of extensions: 461051
Number of successful extensions: 1255
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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