Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00490
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    27   3.3  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    26   5.8  

>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 415 QKHHNENYLVLKARFATQNYTSYNNNNR---YIYVLHILVP 302
           Q+H+ + Y+V +  +    YT  N   R   Y Y  H+++P
Sbjct: 79  QRHNKQEYVVYEKNWIFVPYTGANRTLRAGNYEYPFHVMLP 119


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 567 LFPVLLNLRNEYSD*NEFQYSVSL 496
           +F    N++N Y D N+F Y++ L
Sbjct: 168 IFIPWFNIQNSYDDPNDFNYAIGL 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,491
Number of Sequences: 5004
Number of extensions: 44278
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)