Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00490
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine re...    32   0.44 
AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical...    28   5.4  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    28   7.1  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    28   7.1  

>AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 32 protein.
          Length = 297

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 22/83 (26%), Positives = 43/83 (51%)
 Frame = -1

Query: 657 LDIFSTHLCKYIDILMLIKSLVTIILN*NILFPVLLNLRNEYSD*NEFQYSVSL**NVQN 478
           +DI  T +C    +L  + SLVTI+LN N+++ ++L       D   F Y  ++  ++  
Sbjct: 1   MDIIITVVC----LLGAVSSLVTIVLNGNLVWKIVLKKSKRNDDLQLFYYRFTM--DICF 54

Query: 477 TSKLPMYTYI*IVKADIKYRFRN 409
           ++ L +Y    I+  ++ + F N
Sbjct: 55  STCLLVYIIFVILTMEVPHLFSN 77


>AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical
           protein Y113G7B.9 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -1

Query: 618 ILMLIKSLVTIILN*NILFPVLLNLRNEYSD*NEFQYSVSL 496
           +L +I +++TI+LN N++  ++LN     +D   F Y  +L
Sbjct: 10  LLGIISAIITILLNINLVVKIVLNPSKRKNDMYLFYYRFTL 50


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 403 NENYLVLKARFATQNYTSYNNNNR 332
           N NY     R A ++YTS+ NN+R
Sbjct: 325 NRNYTAYGERQARESYTSFTNNDR 348


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 403 NENYLVLKARFATQNYTSYNNNNR 332
           N NY     R A ++YTS+ NN+R
Sbjct: 547 NRNYTAYGERQARESYTSFTNNDR 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,736,160
Number of Sequences: 27780
Number of extensions: 235180
Number of successful extensions: 450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)