Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00490
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18270.2 68418.m02148 no apical meristem (NAM) family protein...    27   8.7  
At5g18270.1 68418.m02147 no apical meristem (NAM) family protein...    27   8.7  
At3g18800.1 68416.m02388 expressed protein                             27   8.7  

>At5g18270.2 68418.m02148 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 335

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 421 PFQKHHNENYLVLKAR--FATQNYTSYNNNNRYIYVLHILVPTIYNV*NLREVTCVSETC 248
           P Q HH  +Y  +     F + + ++YNNNN  I +   LV       ++ + TC+S   
Sbjct: 238 PIQPHHFNSYQSIFNHQVFGSASGSTYNNNNEMIKMEQSLV-------SVSQETCLSSDV 290

Query: 247 AAKENFTTSL 218
            A    TT +
Sbjct: 291 NANMTTTTEV 300


>At5g18270.1 68418.m02147 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 335

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 421 PFQKHHNENYLVLKAR--FATQNYTSYNNNNRYIYVLHILVPTIYNV*NLREVTCVSETC 248
           P Q HH  +Y  +     F + + ++YNNNN  I +   LV       ++ + TC+S   
Sbjct: 238 PIQPHHFNSYQSIFNHQVFGSASGSTYNNNNEMIKMEQSLV-------SVSQETCLSSDV 290

Query: 247 AAKENFTTSL 218
            A    TT +
Sbjct: 291 NANMTTTTEV 300


>At3g18800.1 68416.m02388 expressed protein
          Length = 197

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 441 LSIYMYTLEVLKCSEHFIIMRRCIEIRSSLNIHSLNSIEQEI 566
           L  Y+   + L+C   F   RRC ++   L  H L  I+  I
Sbjct: 92  LFFYVSVAQTLRCINGFKYQRRCHKLTLGLATHKLRFIKSRI 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,319,865
Number of Sequences: 28952
Number of extensions: 193744
Number of successful extensions: 271
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)