Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00489
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    25   0.65 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.1  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   1.1  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   3.4  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 531 LYLSYISIVKELFHYHSYILIYLSEKNTNFGNRTTVCSKIIIMFSNVTIRVL 686
           +YL+  S+V  L  +   + +YL+ K  N G   ++ S  + ++  +TI+ L
Sbjct: 35  VYLTSFSVVLSLGSF--IVSVYLTTKIDNDGESISLASGWLDLYLGITIQTL 84


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 238 FGNSYYPQLQLISLYKLHRYLFHKSLHDLPP 146
           +GN Y+PQL       +H  +    LHD  P
Sbjct: 81  YGNYYHPQLHSHHGPPIHHQIRPPILHDTQP 111


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 238 FGNSYYPQLQLISLYKLHRYLFHKSLHDLPP 146
           +GN Y+PQL       +H  +    LHD  P
Sbjct: 81  YGNYYHPQLHSHHGPPIHHQIRPPILHDTQP 111


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 238 FGNSYYPQLQLISLYKLHRYLFHKSLHDLPP 146
           +GN Y+PQL       +H  +    LHD  P
Sbjct: 81  YGNYYHPQLHSHHGPPIHHQIRPPILHDTQP 111


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 238 FGNSYYPQLQLISLYKLHRYLFHKSLHDLPP 146
           +GN Y+PQL       +H  +    LHD  P
Sbjct: 81  YGNYYHPQLHSHHGPPIHHQIRPPILHDTQP 111


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 611 YKFWK*NNCLFK--DYYYVLKCNNKGPVPDFLFFIWVTL 721
           + FW     LF   D++   +C+N+  +  +L FI+V +
Sbjct: 69  FNFW---TILFSRSDFFQQFECDNEPKLRHYLIFIFVNV 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,877
Number of Sequences: 336
Number of extensions: 3715
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)