Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00489
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce... 66 5e-12
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 29 0.71
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 27 2.2
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 26 6.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.7
>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 97
Score = 66.1 bits (154), Expect = 5e-12
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +1
Query: 130 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
IK+LHE +GH+VT E G YRGKLIEAEDNMNCQM ++V
Sbjct: 5 IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISV 46
Score = 64.1 bits (149), Expect = 2e-11
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 4/50 (8%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK----RQGNKPTAGR 392
T RDGRV+ L+ VYIRGS IRFLI+PDML+NAPMFK R PT GR
Sbjct: 47 TARDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMFKVGPGRSVPLPTRGR 96
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 29.1 bits (62), Expect = 0.71
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 8/39 (20%)
Frame = -1
Query: 238 FGNSYYPQLQLI-------SLYKLHRYLFHKSL-HDLPP 146
+ N Y+P+ + + ++Y LHR + HKSL H LPP
Sbjct: 126 YENGYFPEKETLVEARNVGAVYALHRIMSHKSLQHALPP 164
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 282 LENVYIRGSKIRFLILPDMLKNAPMFKRQGNKP 380
+E + IRG+ IR+ ILPD L + KP
Sbjct: 55 VETLSIRGNNIRYYILPDSLPLDTLLIDDSTKP 87
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 406 IALFPRPAVGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSC 278
I+LFP+ V +F L I AF N N KN E + FS C
Sbjct: 223 ISLFPKSHVVIFHYYLGIVAFLNQ--NYKNASAELEI-AFSLC 262
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 280 CATRPSLYV----LLRESFGNSYYPQLQLISLYKLHRYLFHKSLHDLP 149
C+T P+ +V L+++S+ N+ + Q+ +HRY S +LP
Sbjct: 1100 CSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP 1147
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 280 CATRPSLYV----LLRESFGNSYYPQLQLISLYKLHRYLFHKSLHDLP 149
C+T P+ +V L+++S+ N+ + Q+ +HRY S +LP
Sbjct: 1100 CSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP 1147
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 280 CATRPSLYV----LLRESFGNSYYPQLQLISLYKLHRYLFHKSLHDLP 149
C+T P+ +V L+++S+ N+ + Q+ +HRY S +LP
Sbjct: 1100 CSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP 1147
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 280 CATRPSLYV----LLRESFGNSYYPQLQLISLYKLHRYLFHKSLHDLP 149
C+T P+ +V L+++S+ N+ + Q+ +HRY S +LP
Sbjct: 1100 CSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP 1147
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 280 CATRPSLYV----LLRESFGNSYYPQLQLISLYKLHRYLFHKSLHDLP 149
C+T P+ +V L+++S+ N+ + Q+ +HRY S +LP
Sbjct: 1100 CSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP 1147
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 280 CATRPSLYV----LLRESFGNSYYPQLQLISLYKLHRYLFHKSLHDLP 149
C+T P+ +V L+++S+ N+ + Q+ +HRY S +LP
Sbjct: 1100 CSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP 1147
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 280 CATRPSLYV----LLRESFGNSYYPQLQLISLYKLHRYLFHKSLHDLP 149
C+T P+ +V L+++S+ N+ + Q+ +HRY S +LP
Sbjct: 1100 CSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP 1147
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 280 CATRPSLYV----LLRESFGNSYYPQLQLISLYKLHRYLFHKSLHDLP 149
C+T P+ +V L+++S+ N+ + Q+ +HRY S +LP
Sbjct: 1100 CSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP 1147
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 280 CATRPSLYV----LLRESFGNSYYPQLQLISLYKLHRYLFHKSLHDLP 149
C+T P+ +V L+++S+ N+ + Q+ +HRY S +LP
Sbjct: 1100 CSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP 1147
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 280 CATRPSLYV----LLRESFGNSYYPQLQLISLYKLHRYLFHKSLHDLP 149
C+T P+ +V L+++S+ N+ + Q+ +HRY S +LP
Sbjct: 1100 CSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP 1147
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 280 CATRPSLYV----LLRESFGNSYYPQLQLISLYKLHRYLFHKSLHDLP 149
C+T P+ +V L+++S+ N+ + Q+ +HRY S +LP
Sbjct: 1100 CSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP 1147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,476
Number of Sequences: 5004
Number of extensions: 61762
Number of successful extensions: 175
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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