Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00489
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13...    73   2e-13
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741...    73   2e-13
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    33   0.18 
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744...    32   0.56 
11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399           28   9.1  
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249...    28   9.1  

>02_01_0022 -
           135655-135717,137426-137482,137559-137678,137762-137920
          Length = 132

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 29/49 (59%), Positives = 39/49 (79%)
 Frame = +1

Query: 106 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT 252
           ++ S+G+P+K+LHEA GHVVT E  TGEVYRG ++E EDN NCQ+  +T
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNIT 49



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 28/42 (66%), Positives = 38/42 (90%)
 Frame = +3

Query: 240 DSRNSTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 365
           D+   T +DG+V+QLE+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 46  DNITFTAKDGKVSQLEHVFIRGSRVRFMIIPDMLKNAPMFKR 87


>03_02_0318 +
           7417361-7417519,7417638-7417690,7417770-7417836,
           7417925-7417981,7420005-7420067
          Length = 132

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 29/49 (59%), Positives = 39/49 (79%)
 Frame = +1

Query: 106 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT 252
           ++ S+G+P+K+LHEA GHVVT E  TGEVYRG ++E EDN NCQ+  +T
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNIT 49



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 28/42 (66%), Positives = 38/42 (90%)
 Frame = +3

Query: 240 DSRNSTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 365
           D+   T +DG+V+QLE+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 46  DNITFTAKDGKVSQLEHVFIRGSRVRFMIIPDMLKNAPMFKR 87


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 124 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 240
           +P+ +L  A+GH +  E   GE Y G L+  +  MN  +
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40


>04_04_0192 -
           23471346-23471572,23473004-23473195,23474342-23474418,
           23475810-23475850,23475928-23475974,23476108-23476194,
           23476807-23477011,23477747-23477866
          Length = 331

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = +3

Query: 282 LENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGRGKSAI 407
           L+++ +RG+ IR+ ILPD L    +      + +  KPTAGR   A+
Sbjct: 217 LDHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGRAAWAV 263


>11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399
          Length = 595

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 551 NCQGIISLSFLYIDISK*EKYKFWK*NNCLFKDYYY 658
           NC   +  SF+ +D+ + E Y     N  LF +YY+
Sbjct: 206 NCSSTVEESFV-LDVKRGESYLLRVINTALFSEYYF 240


>02_04_0403 -
           22622014-22622075,22622159-22622350,22624834-22624910,
           22625026-22625039
          Length = 114

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
 Frame = +3

Query: 285 ENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGR 392
           +++ +RG+ IR+ ILPD L    +      + +  KPTAG+
Sbjct: 56  DHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGK 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,096,987
Number of Sequences: 37544
Number of extensions: 344291
Number of successful extensions: 827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)