Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00489
(751 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein. 100 1e-20
CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein. 100 1e-20
BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear ribonucle... 100 1e-20
BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear ribonucle... 100 1e-20
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 33 1.4
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 33 1.4
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 33 1.4
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 33 1.4
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 33 1.4
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 33 1.4
AK128451-1|BAC87447.1| 368|Homo sapiens protein ( Homo sapiens ... 31 5.8
>U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein.
Length = 126
Score = 99.5 bits (237), Expect = 1e-20
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TV
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITV 48
Score = 85.0 bits (201), Expect = 3e-16
Identities = 44/55 (80%), Positives = 45/55 (81%), Gaps = 3/55 (5%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 410
TYRDGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 49 TYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein.
Length = 126
Score = 99.5 bits (237), Expect = 1e-20
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TV
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITV 48
Score = 85.0 bits (201), Expect = 3e-16
Identities = 44/55 (80%), Positives = 45/55 (81%), Gaps = 3/55 (5%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 410
TYRDGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 49 TYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 99.5 bits (237), Expect = 1e-20
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TV
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITV 48
Score = 85.0 bits (201), Expect = 3e-16
Identities = 44/55 (80%), Positives = 45/55 (81%), Gaps = 3/55 (5%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 410
TYRDGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 49 TYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 99.5 bits (237), Expect = 1e-20
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +1
Query: 112 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTV 255
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+ +TV
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITV 48
Score = 85.0 bits (201), Expect = 3e-16
Identities = 44/55 (80%), Positives = 45/55 (81%), Gaps = 3/55 (5%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 410
TYRDGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 49 TYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 32.7 bits (71), Expect = 1.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 398
T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 46 TLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 32.7 bits (71), Expect = 1.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 398
T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 46 TLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 32.7 bits (71), Expect = 1.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 398
T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 46 TLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 32.7 bits (71), Expect = 1.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 398
T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 46 TLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 32.7 bits (71), Expect = 1.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 398
T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 46 TLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 32.7 bits (71), Expect = 1.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +3
Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 398
T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 46 TLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>AK128451-1|BAC87447.1| 368|Homo sapiens protein ( Homo sapiens
cDNA FLJ46594 fis, clone THYMU3045692. ).
Length = 368
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 310 LEPRMYTFSSCATRPSLYVLLRESFGNSYYPQLQLISLYKLHRYLFHKSLH-DLPP 146
+ P MY F PS+++ + S +P + +S+Y H +H +PP
Sbjct: 274 IHPSMYPFIHLCNHPSIHLFIHPCIHPSIHPSIH-VSIYPTMHLSIHPCIHPSIPP 328
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,798,023
Number of Sequences: 237096
Number of extensions: 1992095
Number of successful extensions: 3901
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3901
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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