Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00489
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putati...    71   1e-12
At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3, put...    68   6e-12
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati...    33   0.15 
At1g20600.1 68414.m02573 DNA-binding protein-related low similar...    33   0.15 
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t...    32   0.35 
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t...    32   0.35 
At5g38580.1 68418.m04665 hypothetical protein                          29   4.4  
At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1, put...    29   4.4  
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L...    28   5.8  
At1g17700.1 68414.m02191 prenylated rab acceptor (PRA1) family p...    28   5.8  

>At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           small nuclear ribonucleoprotein Sm D3 (snRNP core
           protein D3, Sm-D3) [Mus musculus] SWISS-PROT:P43331
          Length = 131

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 27/49 (55%), Positives = 39/49 (79%)
 Frame = +1

Query: 106 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT 252
           ++ S+G+P+K+LHEA GH+VT E  +GE+YRG +IE EDN NCQ+  +T
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDIT 49



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 25/37 (67%), Positives = 36/37 (97%)
 Frame = +3

Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 365
           T +DG+V+QLE+V+IRGSK+RF+++PD+LK+APMFKR
Sbjct: 51  TAKDGKVSQLEHVFIRGSKVRFMVIPDILKHAPMFKR 87


>At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3,
           putative / snRNP core protein D3, putative / Sm protein
           D3, putative similar to SWISS-PROT:P43331 small nuclear
           ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3)
           [Mouse]
          Length = 128

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 25/49 (51%), Positives = 39/49 (79%)
 Frame = +1

Query: 106 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVT 252
           ++ S+G+P+K+LHE+ GH+V+ E  +GE+YRG +IE EDN NCQ+  +T
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENIT 49



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 32/52 (61%), Positives = 41/52 (78%)
 Frame = +3

Query: 255 TYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKSAIL 410
           T +DG+V+QLE+V+IRGS +RFL++PDMLKNAPMF     K   G+GKSA L
Sbjct: 51  TAKDGKVSQLEHVFIRGSLVRFLVIPDMLKNAPMF-----KDVRGKGKSASL 97


>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
           LSm4 [Mus musculus]
          Length = 129

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 124 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 240
           +P+ +L  A+GH +  E   GE Y G L+  +  MN  +
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40


>At1g20600.1 68414.m02573 DNA-binding protein-related low similarity
           to RAV2 [Arabidopsis thaliana] GI:3868859
          Length = 237

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/18 (72%), Positives = 18/18 (100%)
 Frame = +3

Query: 264 DGRVAQLENVYIRGSKIR 317
           DG+V+QLE+V+IRGSK+R
Sbjct: 215 DGKVSQLEHVFIRGSKVR 232


>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
            kinesin-like protein [Arabidopsis thaliana] GI:27260890;
            contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 425  WSRTSRWKRWGPPWRLARWVRT 490
            W    +WK W  PWRL+ W+RT
Sbjct: 995  WIVQFKWK-WQKPWRLSEWIRT 1015


>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
            kinesin-like protein [Arabidopsis thaliana] GI:27260890;
            contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 425  WSRTSRWKRWGPPWRLARWVRT 490
            W    +WK W  PWRL+ W+RT
Sbjct: 995  WIVQFKWK-WQKPWRLSEWIRT 1015


>At5g38580.1 68418.m04665 hypothetical protein
          Length = 168

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 192 NFTGICFTSHYMTFRLVKYFNRHTDRHVYVLVKKN 88
           NF   C  S   T    +YF R  DR + V + KN
Sbjct: 88  NFVPECLLSSLQTLLWSRYFGRQQDRDIAVYILKN 122


>At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1,
           putative / snRNP core protein D1, putative / Sm protein
           D1, putative similar to small nuclear ribonucleoprotein
           Sm D1 (snRNP core protein D1, Sm-D1, Sm-D autoantigen)
           [Mouse] SWISS-PROT:P13641
          Length = 116

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = +3

Query: 282 LENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGR 392
           L+++ +RG+ IR+ ILPD L    +      + +  KPTAG+
Sbjct: 55  LDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 96


>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
            PROTEIN KIF4, Homo sapiens, EMBL:AF179308
          Length = 1051

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 425  WSRTSRWKRWGPPWRLARWVR 487
            W    +WK W  PW+L+ W++
Sbjct: 1000 WLLQFKWK-WQKPWKLSEWIK 1019


>At1g17700.1 68414.m02191 prenylated rab acceptor (PRA1) family
           protein weak similarity to prenylated Rab acceptor 1
           (PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
           PF03208: Prenylated rab acceptor (PRA1)
          Length = 180

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 630 TTVCSKIIIMFSNVTIRVLFQIFCFLFGSPFNLL 731
           T + +  +   +N TI VLF +F  L  +PF+LL
Sbjct: 59  TRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLL 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,292,029
Number of Sequences: 28952
Number of extensions: 300860
Number of successful extensions: 797
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)