Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00488
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    25   0.64 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   3.4  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   7.9  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.9  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = -2

Query: 526 TLMTTTLFEVRNFRLKGKIIHSFSNICKFQKQKKKHFNARTTLTPLEIKYLPLPF*CKYI 347
           TLM TTL  +R+  L   +I+S   + K   +   +     T      KY  L   C  +
Sbjct: 7   TLMQTTLRLIRDLSLYFSVIYSLLRV-KRMMRSWYYLLTNLTYNNTNRKYYWLNVCCLNL 65

Query: 346 QVFSTGHLFSFFQAQLIS*VMKFFYFH 266
            + +    F+F   +L   +++F  +H
Sbjct: 66  SIVTI--FFNFATKKLEQFIVRFMKYH 90


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 349 IQVFSTGHLFSFFQAQLIS*VMKFFY 272
           IQVF T    SFF+  L S +M  +Y
Sbjct: 156 IQVFGTMQRTSFFKTFLNSCLMDVYY 181


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = +2

Query: 440 KFADITKAMYNLTFQSKISNFK*CSGHESNSYQSTLSIV 556
           K   I  + YN      + NF+ C  H++      L+++
Sbjct: 14  KAPKIVNSKYNSILNIALKNFRLCKKHKTKKPVQILALL 52


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = +2

Query: 440 KFADITKAMYNLTFQSKISNFK*CSGHESNSYQSTLSIV 556
           K   I  + YN      + NF+ C  H++      L+++
Sbjct: 14  KAPKIVNSKYNSILNIALKNFRLCKKHKTKKPVQILALL 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,467
Number of Sequences: 336
Number of extensions: 3314
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)