Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00488
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)                   29   5.2  
SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18)                   29   5.2  

>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -2

Query: 199  SFQEGSCVPGIGANSDTPGICSGHSSGEALSSFSELKRLSSKDVNGISSD 50
            S QEG+   G G + D PG  +  S     S  SE KR+S    N   SD
Sbjct: 2112 SDQEGARKGGFGLDEDRPGYSTADSIPHFSSGSSEDKRMSDSSFNRGGSD 2161


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 100  RSLIELHQNY-GLNKFREYRSLHRCQARRSLPGMKVSQNRTT 222
            R+L ELH+++ G+ K +E    H C  RR L  +++   RTT
Sbjct: 1456 RTLDELHESHLGIVKMKELARGHICCCRRLLQWLEIVPMRTT 1497


>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
          Length = 1468

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 113 SFTRTMA*TNSGSIGVCTDARHAGAFLE*RSHKTGLHLHATTWNT 247
           S+ RT+   N+   G CTD    G FL  +S + GLH  ++  NT
Sbjct: 468 SWIRTLYCVNTNMPGNCTDGSRTGYFLMLKSSQ-GLHGQSSMINT 511


>SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18)
          Length = 323

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 202 PSFQEGSCVPGIGANSDTPGICSGHSSGEALSSFSELKRLSSK-DVNGISS 53
           P       +PGI A    PGI + HSS   +S+   L  +S+K  + GIS+
Sbjct: 250 PGISATHSLPGISATHSLPGISATHSS-PGISATHSLPGISAKHSLPGISA 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,110,133
Number of Sequences: 59808
Number of extensions: 422786
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)