Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00488
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 32 0.35
At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase... 30 1.4
At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /... 29 2.4
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,... 27 9.8
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,... 27 9.8
At3g06770.3 68416.m00803 glycoside hydrolase family 28 protein /... 27 9.8
At3g06770.2 68416.m00804 glycoside hydrolase family 28 protein /... 27 9.8
At3g06770.1 68416.m00802 glycoside hydrolase family 28 protein /... 27 9.8
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ... 27 9.8
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 496 RNFRLKGKIIHSFSNICKFQKQKKKHFNARTTLTPLEIKYLPL 368
RN L GKII S + F+ K K F T PLE+ + PL
Sbjct: 241 RNRSLDGKIITSLAKFMVFEPSKIKSFINSVTSVPLELIHEPL 283
>At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase (PG1) GI:5669846,
(PG2) GI:5669848 [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 470
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 477 PFSLKFLTSNNVVVMRVTLINQPL 548
P +L+F +SNNV V ++++N PL
Sbjct: 193 PTALRFYSSNNVTVRDISIVNSPL 216
>At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Salix gilgiana] GI:6714524; contains
PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 414
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 465 CIILPFSLKFLTSNNVVVMRVTLIN 539
C +LP SLKF+ N VV R++ +N
Sbjct: 150 CKLLPTSLKFVGMNRTVVRRISSVN 174
>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 157 SDTPGICSGHSSGEALSSFSELKRLSSKDVNGISSDDAWSST 32
SDT + SG ++G E+ + S NG++S W T
Sbjct: 290 SDTDSVSSGSTNGAHECGSGEVSKTRSLPRNGMASTKFWQET 331
>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 627
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 157 SDTPGICSGHSSGEALSSFSELKRLSSKDVNGISSDDAWSST 32
SDT + SG ++G E+ + S NG++S W T
Sbjct: 290 SDTDSVSSGSTNGAHECGSGEVSKTRSLPRNGMASTKFWQET 331
>At3g06770.3 68416.m00803 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 377
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 477 PFSLKFLTSNNVVVMRVTLINQP 545
P ++FL+S NV+V +T +N P
Sbjct: 110 PHLIEFLSSENVIVSNLTFLNAP 132
>At3g06770.2 68416.m00804 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 446
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 477 PFSLKFLTSNNVVVMRVTLINQP 545
P ++FL+S NV+V +T +N P
Sbjct: 179 PHLIEFLSSENVIVSNLTFLNAP 201
>At3g06770.1 68416.m00802 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 377
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 477 PFSLKFLTSNNVVVMRVTLINQP 545
P ++FL+S NV+V +T +N P
Sbjct: 110 PHLIEFLSSENVIVSNLTFLNAP 132
>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1720
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -1
Query: 338 FHGSSL*LLPGPVDKLSHEVFLLP**DHRCKCSKLLHV 225
+HG S+ + P + +++FL D++ KCSKL+H+
Sbjct: 798 YHGFSIKVFEEPY-MVKNDLFLHADKDYKTKCSKLVHM 834
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,757,129
Number of Sequences: 28952
Number of extensions: 288166
Number of successful extensions: 681
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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