Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00487
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 290 2e-79
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 289 2e-79
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 289 2e-79
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 161 7e-41
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 154 1e-38
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 96 5e-21
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 50 5e-07
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 47 3e-06
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 47 3e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 42 1e-04
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 41 2e-04
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 35 0.011
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.025
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 33 0.057
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 32 0.076
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.40
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 28 1.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 28 1.6
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 27 2.2
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.9
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 3.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.0
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 8.7
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 8.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 290 bits (711), Expect = 2e-79
Identities = 151/236 (63%), Positives = 168/236 (71%), Gaps = 5/236 (2%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 237 DKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 416
DKLKAE GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 417 GEFEAGISKNGQTREHALLAFTLGVKQLIVG*TKWIPLNHHTVSPDLRKSRRKYPHTSRR 596
GEFEAGISK+GQTREHALLA+TLGVKQLIV K T + TS
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM-----DTTGWSQARFEEIVKETSNF 175
Query: 597 LATTQLLSLSCPFLDGT----ETTCWSFNQNAWFKGWQWSVKKAS*R-KMLIEALD 749
+ + PF+ + + W++GWQ K + K L+EA+D
Sbjct: 176 IKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAID 231
Score = 71.7 bits (168), Expect = 1e-13
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = +2
Query: 509 VNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLELQPKC-LV 685
VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+E
Sbjct: 152 VNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWY 209
Query: 686 QGMAVERKEG 715
QG E K G
Sbjct: 210 QGWQKETKAG 219
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 289 bits (710), Expect = 2e-79
Identities = 150/236 (63%), Positives = 168/236 (71%), Gaps = 5/236 (2%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 237 DKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 416
DKLKAE GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 417 GEFEAGISKNGQTREHALLAFTLGVKQLIVG*TKWIPLNHHTVSPDLRKSRRKYPHTSRR 596
GEFEAGISK+GQTREHALLA+TLGVKQLIV K T + TS
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM-----DTTGWSQARFEEIVKETSNF 175
Query: 597 LATTQLLSLSCPFLDGT----ETTCWSFNQNAWFKGWQWSVKKAS*R-KMLIEALD 749
+ + PF+ + + W++GWQ K + K L+EA+D
Sbjct: 176 IKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAID 231
Score = 71.7 bits (168), Expect = 1e-13
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = +2
Query: 509 VNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLELQPKC-LV 685
VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+E
Sbjct: 152 VNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWY 209
Query: 686 QGMAVERKEG 715
QG E K G
Sbjct: 210 QGWQKETKAG 219
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 289 bits (710), Expect = 2e-79
Identities = 150/236 (63%), Positives = 168/236 (71%), Gaps = 5/236 (2%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 237 DKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 416
DKLKAE GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 417 GEFEAGISKNGQTREHALLAFTLGVKQLIVG*TKWIPLNHHTVSPDLRKSRRKYPHTSRR 596
GEFEAGISK+GQTREHALLA+TLGVKQLIV K T + TS
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM-----DTTGWSQARFEEIVKETSNF 175
Query: 597 LATTQLLSLSCPFLDGT----ETTCWSFNQNAWFKGWQWSVKKAS*R-KMLIEALD 749
+ + PF+ + + W++GWQ K + K L+EA+D
Sbjct: 176 IKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAID 231
Score = 71.7 bits (168), Expect = 1e-13
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = +2
Query: 509 VNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLELQPKC-LV 685
VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+E
Sbjct: 152 VNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWY 209
Query: 686 QGMAVERKEG 715
QG E K G
Sbjct: 210 QGWQKETKAG 219
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 161 bits (392), Expect = 7e-41
Identities = 73/146 (50%), Positives = 101/146 (69%)
Frame = +3
Query: 69 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 248
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 249 AEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 428
E G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 429 AGISKNGQTREHALLAFTLGVKQLIV 506
AG + GQTREHA+LA T G+ L+V
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVV 381
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 154 bits (374), Expect = 1e-38
Identities = 73/150 (48%), Positives = 98/150 (65%)
Frame = +3
Query: 69 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 248
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 249 AEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 428
E + G+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 429 AGISKNGQTREHALLAFTLGVKQLIVG*TK 518
G +NGQTREHA L LG+ +++V K
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNK 324
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +2
Query: 509 VNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLE 664
VNK+D +SE RF+EIK VS + IK +G+ + V FVPIS G N+++
Sbjct: 322 VNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 95.9 bits (228), Expect = 5e-21
Identities = 59/148 (39%), Positives = 83/148 (56%)
Frame = +3
Query: 63 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 242
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 243 LKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 422
E + GITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 423 FEAGISKNGQTREHALLAFTLGVKQLIV 506
QTREH LLA +GVKQ++V
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVV 174
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 49.6 bits (113), Expect = 5e-07
Identities = 35/113 (30%), Positives = 50/113 (44%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVS 260
N+ +I H+D+GK+T T ++Y G F + G V+D L AE
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 261 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
GITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 46.8 bits (106), Expect = 3e-06
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 227
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 228 WVLDKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 404
+ L AE++ D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 46.8 bits (106), Expect = 3e-06
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 227
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 228 WVLDKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 404
+ L AE++ D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 41.5 bits (93), Expect = 1e-04
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVS 260
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ E
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 261 VGITIDIAL----WK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 383
GITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 384 DCAVLIVAAGTGEFEAGISKNGQTREH 464
D AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 40.7 bits (91), Expect = 2e-04
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVS 260
N VI H+D GKST + ++ G I++ + F LDKL+ E
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 261 VGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
GIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 35.1 bits (77), Expect = 0.011
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 251
N ++ HVD GK+T L+ G I + T+ + E+ +G + +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 252 EVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
+S K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 81 VISQNDE------KRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.025
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 264 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 32.7 bits (71), Expect = 0.057
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +2
Query: 509 VNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLELQPKCLVQ 688
+ KMD E + E +F + + S++K+ F+PISG G N+ + + L Q
Sbjct: 416 ITKMDEIE--WDENKFINLVNSIQSFLKESCGIIEKSKFIPISGLKGTNLTSISQEKLSQ 473
Query: 689 GMAVERKEGKLTENA 733
+ GK+ + A
Sbjct: 474 WYKSDTLLGKIDKEA 488
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 32.3 bits (70), Expect = 0.076
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 312 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 491
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 492 KQLIV 506
K +I+
Sbjct: 163 KHIII 167
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.9 bits (64), Expect = 0.40
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Frame = +3
Query: 90 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAEVSV 263
++GHVD+GK+ +L + +++ E Q++G F + K K
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 264 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 404
G K + + + IID PGH F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 298 SNFQRAISIVIPTLTSAFSLSNTQAYLKDPLPISWASFSNFSMV 167
S F IS+ +PT + FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 265 PTLTSAFSLSNTQAYLKDPLPIS-WASFSNFSMVRLSIPPHL 143
PT + S + + Y+K P+P S ++S N S++ +PP +
Sbjct: 558 PTNVNYSSCVDPRTYVKTPIPFSKFSSSENLSLIPSLLPPSI 599
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 255 VSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 410
++VG D ++K + + + + PGH D I+++ S LI A
Sbjct: 186 IAVGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.9
Identities = 24/108 (22%), Positives = 48/108 (44%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVS 260
+ +V GH+ GKS L+Y T + + + + + +++ + S
Sbjct: 142 SFIVAGHLHHGKSALLDLLVY-------YTHPDTKPPKRRSLRYTDTHYLERERVMSIKS 194
Query: 261 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 404
+T+ ++ K +T + ID PGH DF+ + + +D VL+V
Sbjct: 195 TPLTLAVSDMKGKT--FAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 249 AEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKN 359
AE +V I I A + + +T+ID PG DFI N
Sbjct: 67 AEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 590 KKIGYNPAAVAFVPISGWHGDNMLELQPKCLVQGMAVERK 709
+K+ NP+A FVP S E K LV+ AVE++
Sbjct: 1335 QKVALNPSAPEFVPDSTPSDAVASETDNKNLVENKAVEKR 1374
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 540 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 629
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 243 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 115
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,198
Number of Sequences: 5004
Number of extensions: 67399
Number of successful extensions: 241
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -