Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00487
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 130 2e-30
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 120 1e-27
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 106 2e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 44 1e-04
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 38 0.011
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 37 0.020
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 33 0.034
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.3
SB_22670| Best HMM Match : Pkinase (HMM E-Value=0) 29 5.3
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 29 5.3
SB_26607| Best HMM Match : K_tetra (HMM E-Value=3.3e-08) 28 7.0
SB_19692| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_20913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 130 bits (313), Expect = 2e-30
Identities = 56/122 (45%), Positives = 84/122 (68%)
Frame = +3
Query: 141 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVSVGITIDIALWKFETSKYYVT 320
Y G +DKRT+EK+E+EA+E + ++ +W LD + E G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 321 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 500
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 501 IV 506
++
Sbjct: 286 VI 287
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +2
Query: 509 VNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 610
VNKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 289 VNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 120 bits (289), Expect = 1e-27
Identities = 55/60 (91%), Positives = 56/60 (93%)
Frame = +3
Query: 201 MGKGSFKYAWVLDKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 380
MGKGSFKYAWVLDKLKAE GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 106 bits (254), Expect = 2e-23
Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Frame = +3
Query: 273 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 452
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 453 TREHALLAFTLGVKQLIVG*TK--WIPLNHHTVSP 551
TREHA+L +LGV QLIV K + L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 203
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/110 (24%), Positives = 49/110 (44%)
Frame = +3
Query: 90 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVSVGI 269
+I H D+GK+T T L+ G I +EA + K D ++ E GI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 270 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 38.3 bits (85), Expect = 0.007
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Frame = +3
Query: 72 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 239
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 240 KLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 413
EV A E S +T ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 414 TG 419
G
Sbjct: 231 AG 232
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 37.5 bits (83), Expect = 0.011
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 230
M K+ N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 231 VLDKLKAEVSVGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 407
L E+ I K + + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 408 AGTG 419
+G
Sbjct: 132 CVSG 135
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 36.7 bits (81), Expect = 0.020
Identities = 36/135 (26%), Positives = 57/135 (42%)
Frame = +3
Query: 54 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 233
K+ + + NI V+GHVDSGK++ L + F+K Q +G
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKAL------STTASTASFDKNPQSQERGI-----T 76
Query: 234 LDKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 413
LD + V + + E +T++D PGH IK +I G A +I G
Sbjct: 77 LDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQIIGECG 130
Query: 414 TGEFEAGISKNGQTR 458
T E G ++G+ +
Sbjct: 131 T--IEGGFGQSGKVK 143
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.7 bits (71), Expect(2) = 0.034
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 258 SVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 410
S GIT I + + + +D PGH F G D +++VAA
Sbjct: 121 SGGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
Score = 22.2 bits (45), Expect(2) = 0.034
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 84 IVVIGHVDSGKSTTTGHL 137
+ V+GHVD GK++ ++
Sbjct: 94 VTVMGHVDHGKTSLLDYI 111
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 315 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 321 IIDAPGHRDFIKNMITGTSQADCAVLIV 404
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_22670| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 662
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +3
Query: 162 KRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVSVGITIDIA--LWKFETSKYYVTIIDAP 335
+RTI K Q +GKG + W +V+V I + W ET Y ++
Sbjct: 364 QRTIAKQVTLVQSVGKGRYGEVWKARWHGEDVAVKIFLSHCEKSWMRETEIYQTVLLRHE 423
Query: 336 GHRDFIKNMITGTSQADCAVLIV 404
FI + I G+ Q LI+
Sbjct: 424 SILGFIASDIIGSGQVTQMYLIM 446
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 179
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +3
Query: 324 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 503
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 504 V 506
+
Sbjct: 123 I 123
>SB_26607| Best HMM Match : K_tetra (HMM E-Value=3.3e-08)
Length = 412
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 543 VSPDLRKSRRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSFNQNAWFKGWQWSVK 710
V+P +SRR S +LA Q+ S P G + W F + G Q V+
Sbjct: 328 VTPGFSQSRRCKTTASAKLACLQVDSRGSPIQLGVQVFSWVFGYSVGCSGIQLGVR 383
>SB_19692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 685 NQAFWLKLQH-VVSVPSRNGHESDSSW 608
N W + +H +V+ +RNGHE D+ W
Sbjct: 12 NDTEWSRTRHRMVTGVTRNGHEHDTGW 38
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 524 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 664
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_20913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 685 NQAFWLKLQH-VVSVPSRNGHESDSSW 608
N W + +H +V+ +RNGHE D+ W
Sbjct: 12 NDTEWSRTRHRMVTGVTRNGHEHDTGW 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,738,842
Number of Sequences: 59808
Number of extensions: 521036
Number of successful extensions: 1389
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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