Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00487
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 301 4e-82
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 301 4e-82
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 300 8e-82
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 237 5e-63
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 182 2e-46
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 182 2e-46
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 167 1e-41
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 81 1e-15
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 81 1e-15
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 81 1e-15
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 80 2e-15
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 80 2e-15
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 48 7e-06
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 48 9e-06
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 47 1e-05
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 44 9e-05
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.008
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 37 0.018
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 36 0.031
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 35 0.054
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 35 0.054
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.29
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.29
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 33 0.29
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 1.2
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 2.0
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 30 2.0
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.7
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.7
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.7
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.7
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 29 4.7
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 8.1
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 301 bits (738), Expect = 4e-82
Identities = 156/233 (66%), Positives = 168/233 (72%), Gaps = 2/233 (0%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 416
DKLKAE GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 417 GEFEAGISKNGQTREHALLAFTLGVKQLIVG*TKWIPLNHHTVSPDLRKSRRKYPHTSRR 596
GEFEAGISKNGQTREHALLA TLGVKQLIV K + + ++
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 597 LATTQLLSLSCPFLDGTETTCWSFNQN-AWFKGWQWSVKKAS*R-KMLIEALD 749
+ P + N WFKGW K+ + K L+EALD
Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALD 233
Score = 98.7 bits (235), Expect = 4e-21
Identities = 48/69 (69%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +2
Query: 512 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLELQPKC-LVQ 688
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE+ +
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFK 212
Query: 689 GMAVERKEG 715
G AVERKEG
Sbjct: 213 GWAVERKEG 221
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 301 bits (738), Expect = 4e-82
Identities = 156/233 (66%), Positives = 168/233 (72%), Gaps = 2/233 (0%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 416
DKLKAE GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 417 GEFEAGISKNGQTREHALLAFTLGVKQLIVG*TKWIPLNHHTVSPDLRKSRRKYPHTSRR 596
GEFEAGISKNGQTREHALLA TLGVKQLIV K + + ++
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 597 LATTQLLSLSCPFLDGTETTCWSFNQN-AWFKGWQWSVKKAS*R-KMLIEALD 749
+ P + N WFKGW K+ + K L+EALD
Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALD 233
Score = 98.7 bits (235), Expect = 4e-21
Identities = 48/69 (69%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +2
Query: 512 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLELQPKC-LVQ 688
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE+ +
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFK 212
Query: 689 GMAVERKEG 715
G AVERKEG
Sbjct: 213 GWAVERKEG 221
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 300 bits (736), Expect = 8e-82
Identities = 156/201 (77%), Positives = 161/201 (80%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 416
DKLKAE GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 417 GEFEAGISKNGQTREHALLAFTLGVKQLIVG*TKWIPLNHHTVSPDLRKSRRKYPHTSRR 596
GEFEAGISKNGQTREHALLA TLGVKQL + L T SPD +SRR
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQL-------VSLRSPTRSPD----------SSRR 163
Query: 597 LATTQLLSLSCPFLDGTETTC 659
T Q L D TETTC
Sbjct: 164 SDTIQRLFHLSQSPDSTETTC 184
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 237 bits (581), Expect = 5e-63
Identities = 110/117 (94%), Positives = 113/117 (96%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 407
DKLKAE GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 98.7 bits (235), Expect = 4e-21
Identities = 48/69 (69%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +2
Query: 512 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLELQPKC-LVQ 688
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE+ +
Sbjct: 119 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFK 178
Query: 689 GMAVERKEG 715
G AVERKEG
Sbjct: 179 GWAVERKEG 187
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 182 bits (444), Expect = 2e-46
Identities = 86/151 (56%), Positives = 108/151 (71%)
Frame = +3
Query: 66 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 245
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 246 KAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 425
+ E G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 426 EAGISKNGQTREHALLAFTLGVKQLIVG*TK 518
E G GQT+EHALL +LGV QLIV K
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNK 317
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/53 (35%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +2
Query: 509 VNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 664
VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 315 VNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK 363
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 182 bits (444), Expect = 2e-46
Identities = 86/151 (56%), Positives = 108/151 (71%)
Frame = +3
Query: 66 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 245
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 246 KAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 425
+ E G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 426 EAGISKNGQTREHALLAFTLGVKQLIVG*TK 518
E G GQT+EHALL +LGV QLIV K
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNK 335
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/53 (35%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +2
Query: 509 VNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 664
VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 333 VNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK 381
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 167 bits (405), Expect = 1e-41
Identities = 74/149 (49%), Positives = 104/149 (69%)
Frame = +3
Query: 60 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 239
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 240 KLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
E G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 420 EFEAGISKNGQTREHALLAFTLGVKQLIV 506
EFE G + GQTREH++L T GVK L++
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVI 252
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +2
Query: 509 VNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHG 649
VNKMD + E RF+EI+ +++ +++K+G+NP + +VP SG G
Sbjct: 254 VNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG 301
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 64/68 (94%), Positives = 64/68 (94%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 236
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 237 DKLKAEVS 260
DKLK S
Sbjct: 61 DKLKVTKS 68
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 80.6 bits (190), Expect = 1e-15
Identities = 53/143 (37%), Positives = 73/143 (51%)
Frame = +3
Query: 63 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 242
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 89
Query: 243 LKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 422
E + GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 423 FEAGISKNGQTREHALLAFTLGV 491
QTREH LLA +GV
Sbjct: 150 MP-------QTREHLLLARQVGV 165
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 80.6 bits (190), Expect = 1e-15
Identities = 53/143 (37%), Positives = 73/143 (51%)
Frame = +3
Query: 63 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 242
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 243 LKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 422
E + GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 423 FEAGISKNGQTREHALLAFTLGV 491
QTREH LLA +GV
Sbjct: 151 MP-------QTREHLLLARQVGV 166
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 80.6 bits (190), Expect = 1e-15
Identities = 53/143 (37%), Positives = 73/143 (51%)
Frame = +3
Query: 63 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 242
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 243 LKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 422
E + GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 423 FEAGISKNGQTREHALLAFTLGV 491
QTREH LLA +GV
Sbjct: 151 MP-------QTREHLLLARQVGV 166
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 79.8 bits (188), Expect = 2e-15
Identities = 56/148 (37%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Frame = +3
Query: 69 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 242
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 243 LKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 422
K E GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 423 FEAGISKNGQTREHALLAFTLGVKQLIV 506
E QT+EH +LA +GVK + +
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAI 166
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 79.8 bits (188), Expect = 2e-15
Identities = 56/148 (37%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Frame = +3
Query: 69 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 242
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 243 LKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 422
K E GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 423 FEAGISKNGQTREHALLAFTLGVKQLIV 506
E QT+EH +LA +GVK + +
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAI 166
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 48.0 bits (109), Expect = 7e-06
Identities = 34/113 (30%), Positives = 49/113 (43%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVS 260
N ++ HVD GKST L+ CG + +K+ +LDKL+ E
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 261 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
GIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 47.6 bits (108), Expect = 9e-06
Identities = 36/113 (31%), Positives = 50/113 (44%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVS 260
NI VI HVD+GK+T T L+Y G I A + KG+ V D L E
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 261 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
GIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 47.2 bits (107), Expect = 1e-05
Identities = 35/113 (30%), Positives = 49/113 (43%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVS 260
NI + H+DSGK+T T ++Y G ID + +G +D + E
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 261 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
GITI A + + IID PGH DF + D AVL++ G G
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 44.4 bits (100), Expect = 9e-05
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 209
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 210 GSFKYAWVLDKLKAEVSVG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 377
+ + L+K E G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 378 QADCAVLIVAAGTG 419
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 44.0 bits (99), Expect = 1e-04
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Frame = +3
Query: 57 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 209
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 210 GSFKYAWVLDKLKAEVSVG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 377
+ + L+K E G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 378 QADCAVLIVAAGTG 419
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 264 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
GIT I + E +K VT +D PGH F G AD VL+VAA G
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 36.7 bits (81), Expect = 0.018
Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 11/169 (6%)
Frame = +3
Query: 33 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 203
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 204 GKGSFKYAWVL------DKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 365
G+ S +L + + +D + +K VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTI 244
Query: 366 TGTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 506
G + D +L++ A G G T+EH LA +L V +V
Sbjct: 245 FGMTGHMPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV 286
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.9 bits (79), Expect = 0.031
Identities = 39/165 (23%), Positives = 71/165 (43%)
Frame = +3
Query: 78 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEV 257
+N+ ++GHVDSGK+T T + + + F+ A + + +
Sbjct: 14 LNLGILGHVDSGKTTLTRRIA------ELGSTSAFDAHATSTTTDGIR--------RNTL 59
Query: 258 SVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 437
+G + +L S + +ID PGH I+ ++ ++ D A++I+ + AGI
Sbjct: 60 DLGFSTMTSL-----SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGI 109
Query: 438 SKNGQTREHALLAFTLGVKQLIVG*TKWIPLNHHTVSPDLRKSRR 572
QT EH LLA ++I+ K +S +K R+
Sbjct: 110 QP--QTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRK 152
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 35.1 bits (77), Expect = 0.054
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +3
Query: 63 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 239
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 240 KLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 404
+ E + GIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 35.1 bits (77), Expect = 0.054
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +3
Query: 63 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 239
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 240 KLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 404
+ E + GIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 32.7 bits (71), Expect = 0.29
Identities = 28/113 (24%), Positives = 46/113 (40%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVS 260
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 261 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 32.7 bits (71), Expect = 0.29
Identities = 28/113 (24%), Positives = 46/113 (40%)
Frame = +3
Query: 81 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEVS 260
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 261 VGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 419
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 32.7 bits (71), Expect = 0.29
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
Frame = +3
Query: 33 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 203
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 204 GKGSFKYAWVL------DKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 365
G+ S +L + + +D + +K VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEIYLKTTI 244
Query: 366 TGTSQ---ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 506
G + + +L++ A G G T+EH LA +L V +V
Sbjct: 245 FGMHRPYARNYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV 287
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 312 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 407
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 321 IIDAPGHRDFIKNMITGTSQADCAVLIV 404
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 508 PTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 389
PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 16 PTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 29.5 bits (63), Expect = 2.7
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 6/165 (3%)
Frame = +3
Query: 30 QFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC----GGIDKRTIEKFEKEAQ 197
+ ++R P+ ++ + + V+G D GKST G L C G + I +F E +
Sbjct: 154 EVLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIFRFPHEVR 212
Query: 198 EMGKGSFKYAWVLDKLKAEVSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 377
GK S V+ V + E S VT+ID G + K I G +
Sbjct: 213 -TGKTSSVCNDVIGFDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLT 271
Query: 378 --QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 506
A L+VAA + GI+ TREH L L + ++
Sbjct: 272 GYTPHFACLVVAA-----DRGIT--WATREHLGLIAALNIPMFVL 309
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 579 PHTSRRLATTQLLSLSCPFLD 641
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 579 PHTSRRLATTQLLSLSCPFLD 641
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 579 PHTSRRLATTQLLSLSCPFLD 641
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 579 PHTSRRLATTQLLSLSCPFLD 641
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 78 INIVVIGHVDSGKSTTT 128
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.7
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -3
Query: 500 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 342
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 341 VSRSINDGNIVLASFELPESNIDCDTDAHLSL*FVQYPSI 222
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 315 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 410
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,603,087
Number of Sequences: 27780
Number of extensions: 384887
Number of successful extensions: 1185
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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