Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00486
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 50 2e-07
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 43 4e-05
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 38 0.002
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 35 0.012
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 35 0.012
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 35 0.012
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 31 0.15
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 31 0.20
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 31 0.20
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 30 0.27
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 0.62
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 27 3.3
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 27 3.3
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 26 4.4
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 25 7.6
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 7.6
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 25 7.6
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 50.4 bits (115), Expect = 2e-07
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +2
Query: 389 HTIHRHAAFTETAQCSEWSATSTTAANIIQAFMRGVPQELSSSSALQIHMRTHTGDKPFR 568
H RH+ + AQ S+++++AAN+ + Q S S+L+IH +HTG++PF
Sbjct: 439 HVSRRHSTSRKIAQSHTGSSSTSSAANVRYRCTECL-QGFSRPSSLKIHTYSHTGERPFV 497
Query: 569 C--AVCQKAFTTKGNSR 613
C A C KAF + N R
Sbjct: 498 CDYAGCGKAFNVRSNMR 514
Score = 33.5 bits (73), Expect = 0.029
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 17 FACNSALEIHYRSHTKERPFKCTV--CERGFSTKSS 118
F+ S+L+IH SHT ERPF C C + F+ +S+
Sbjct: 477 FSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSN 512
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 43.2 bits (97), Expect = 4e-05
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +2
Query: 416 TETAQCSEWSATSTTAANIIQAFMRGVPQELSSSSALQIHMRTHTGDKPFRCAVCQKAFT 595
+E + S+ + S + N + F G + + + L+ HM THT +PF+C++C+K+F
Sbjct: 552 SENSSSSKAKSESKSQGNYVCTFA-GCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFA 610
Query: 596 TKGNSR 613
+ + R
Sbjct: 611 RQHDKR 616
Score = 36.3 bits (80), Expect = 0.004
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 2 GTSKTFACNSALEIHYRSHTKERPFKCTVCERGFS 106
G +K F L+ H +HT RPF+C++C++ F+
Sbjct: 576 GCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFA 610
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 533 HMRTHTGDKPFRCAVCQKAF 592
H + HTG K F C C + F
Sbjct: 618 HEQLHTGIKAFACVTCNQRF 637
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Frame = +2
Query: 509 SSSSALQIHMRTHTGDKPFRCAV--CQKAFT 595
+S AL H+R+HTG+KPF C+V C ++FT
Sbjct: 88 TSRFALVAHLRSHTGEKPFICSVPECDRSFT 118
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +2
Query: 32 ALEIHYRSHTKERPFKCTV--CERGFS 106
AL H RSHT E+PF C+V C+R F+
Sbjct: 92 ALVAHLRSHTGEKPFICSVPECDRSFT 118
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 34.7 bits (76), Expect = 0.012
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = +2
Query: 533 HMRTHTGDKPFRCAV--CQKAFTTK 601
H+R+HTG+KPF C+ C+K FT +
Sbjct: 22 HIRSHTGEKPFECSYPSCKKRFTRR 46
Score = 29.1 bits (62), Expect = 0.62
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +2
Query: 44 HYRSHTKERPFKCTV--CERGFSTK 112
H RSHT E+PF+C+ C++ F+ +
Sbjct: 22 HIRSHTGEKPFECSYPSCKKRFTRR 46
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 11 KTFACNSALEIHYRSHTKERPFKC--TVCERGFSTKS 115
K ++ S LE H R+H+ ERPF C T C + F KS
Sbjct: 32 KKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKS 68
Score = 33.5 bits (73), Expect = 0.029
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 2 GTSKTFACNSALEIHYRSHTKERPFKCTV--CERGFSTK 112
G SK F S L+IH R HT +PF C C+ F T+
Sbjct: 59 GCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQ 97
Score = 33.1 bits (72), Expect = 0.038
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 500 QELSSSSALQIHMRTHTGDKPFRC--AVCQKAFTTKGN 607
++ S S L+ H+RTH+ ++PF C C KAF K +
Sbjct: 32 KKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSH 69
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 491 GVPQELSSSSALQIHMRTHTGDKPFRCAV--CQKAFTTK 601
G + S L+IH R HT KPF C C F T+
Sbjct: 59 GCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQ 97
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = +2
Query: 2 GTSKTFACNSALEIHYRSHTKERPFKCT--VCERGFS 106
G F LE H H K +P+ CT C+ FS
Sbjct: 89 GCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFS 125
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 34.7 bits (76), Expect = 0.012
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 2 GTSKTFACNSALEIHYRSHTKERPFKCTVCERGF 103
G +K A +E H ++H +RP++C +C+ GF
Sbjct: 449 GCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGF 482
Score = 32.7 bits (71), Expect = 0.050
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 491 GVPQELSSSSALQIHMRTHTGDKPFRCAVCQKAF 592
G + ++ ++ H++TH D+P+RC +C+ F
Sbjct: 449 GCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGF 482
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 497 PQELSSSSALQIHMRTHTGDKPFRCAVCQKAF 592
P+ + L+ H RTH K F C+ C +AF
Sbjct: 34 PKSFTRKEHLRRHERTHENVKAFSCSFCNRAF 65
Score = 29.1 bits (62), Expect = 0.62
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 11 KTFACNSALEIHYRSHTKERPFKCTVCERGFS 106
K+F L H R+H + F C+ C R F+
Sbjct: 35 KSFTRKEHLRRHERTHENVKAFSCSFCNRAFA 66
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 8 SKTFACNSALEIHYRS-HTKERPFKCTVCERGFSTKSS 118
SK F + L H RS HT E+PF C +C + FS + +
Sbjct: 429 SKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDN 465
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 2 GTSKTFACNSALEIHYRSHTKERPFKCTVCERGFS 106
G +K+F H+RSHT + F C C F+
Sbjct: 23 GCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFT 57
Score = 28.7 bits (61), Expect = 0.82
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 488 RGVPQELSSSSALQIHMRTHTGDKPFRCAVCQKAFT 595
+G + + + H R+HT K F C C +FT
Sbjct: 22 QGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFT 57
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 8 SKTFACNSALEIHYRSHTKERPFKCT 85
++ FA L+ H RSHT E+PF C+
Sbjct: 76 TRAFARLEHLKRHIRSHTNEKPFTCS 101
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 524 LQIHMRTHTGDKPFRCA 574
L+ H+R+HT +KPF C+
Sbjct: 85 LKRHIRSHTNEKPFTCS 101
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.62
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +2
Query: 533 HMRTHTGDKPFRCAV--CQKAFT 595
H+RTHTG+KP C C K F+
Sbjct: 44 HIRTHTGEKPHVCTFPGCAKRFS 66
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +2
Query: 44 HYRSHTKERPFKCTV--CERGFS 106
H R+HT E+P CT C + FS
Sbjct: 44 HIRTHTGEKPHVCTFPGCAKRFS 66
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +2
Query: 374 TAYEPHTIHRHAAFTETAQCSEWSATSTTAANIIQAFMRGVPQELSSSSALQ 529
T + T R A F+ T+ S+ S N IQA RGV L LQ
Sbjct: 303 TTFSAPTRRREALFSTTSGLSQRSPVDEKIVNAIQACGRGVLVRLRLVDMLQ 354
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +1
Query: 397 PSTCRLYRNGPVFRVVRHIHHRSKHHPSIYAGCAARTFFVVSVTNPHEDTHRRQAL*MCC 576
P + ++N P F ++RH+ P+ A F E+ + R+ + +C
Sbjct: 445 PKSFADFKNHPEFVLIRHLRREEALLPN--AKPVKTATFGNGKKATSEEVYLRKDVVICK 502
Query: 577 LPEGIHHEG 603
PE H EG
Sbjct: 503 TPENYHKEG 511
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 288 SSEDGRDQSPERRSPEKLDLKRSPPVHVPPPMN 386
S++D + P+R ++ + S PVH+PPP+N
Sbjct: 2 STKDKLNLPPKRT----INTRLSTPVHIPPPIN 30
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSRCIWALTCG 637
+S+ L + + G + F C + + +FT + ++ +W + CG
Sbjct: 77 ISAQEQLFVVVEYMPGGELFDCMLRKGSFTEQDTAKFLWQILCG 120
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 603 PFVVNAFWQTAHLKGLSPVCVLMWICN 523
PF +NA+W++ ++ +P + W N
Sbjct: 106 PFTINAYWRSMCIQFDNPEMLSQWASN 132
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 308 SESRTAVARKTGPETLSACTRAT-AYEPHTIHRHAA 412
S S + K+G E+ + +R + EPH IHRH +
Sbjct: 145 SNSSDSSFSKSGSESNALSSRGSFELEPHGIHRHVS 180
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -3
Query: 347 QVQFFGRPPFWTLIPPILARGRPDDILIEAGGMSRILCVSMCCFILPG*TKAF 189
+V+FFG+P F P R + LIE + L + PG T F
Sbjct: 343 EVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYPGKTMVF 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,879
Number of Sequences: 5004
Number of extensions: 55701
Number of successful extensions: 187
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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