Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00486
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1412 - 37140654-37141088,37141549-37142214 36 0.039
09_04_0564 + 18565583-18566449,18569662-18570123 35 0.069
08_02_1172 + 24898290-24899141,24900864-24901328 35 0.069
06_03_0743 + 24069752-24070483,24071890-24072345 35 0.069
05_05_0022 + 21592403-21593083,21593720-21594208 33 0.21
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 32 0.49
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393 32 0.49
09_02_0366 + 7941550-7942161,7942230-7942775 31 0.64
04_04_0869 - 28883688-28884983 31 1.1
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 30 1.5
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 30 2.0
04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896... 29 2.6
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 29 2.6
11_06_0610 - 25449085-25453284 29 3.4
10_08_0502 - 18369491-18369592,18369782-18369906,18370824-183708... 29 3.4
08_02_0213 + 14349821-14350396,14351360-14351610,14351695-143520... 29 3.4
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 29 3.4
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 29 3.4
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 29 4.5
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 28 6.0
05_03_0502 - 14754532-14754851,14754959-14755042,14755553-147557... 28 6.0
05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557... 28 6.0
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 28 6.0
02_02_0087 - 6650570-6652021 28 6.0
01_06_0039 + 25857805-25858894,25858997-25859345,25860019-258601... 28 6.0
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR 613
L LQ H + G KPFRC C K F KG+ R
Sbjct: 271 LKDFRTLQTHYKRKHGAKPFRCRRCAKPFAVKGDWR 306
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 34.7 bits (76), Expect = 0.069
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 640
L LQ H + G KPF C C KAF KG+ R C +W CG+
Sbjct: 338 LKDFRTLQTHYKRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGS 389
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 34.7 bits (76), Expect = 0.069
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 640
L LQ H + G KPF C C KAF KG+ R C +W CG+
Sbjct: 333 LKDFRTLQTHYKRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGS 384
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 34.7 bits (76), Expect = 0.069
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 640
L LQ H + G KPF C C KAF +G+ R C +W CG+
Sbjct: 293 LKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCACGS 344
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR 613
L LQ H + G KPF C C K F KG+ R
Sbjct: 279 LKDFRTLQTHYKRKHGAKPFACRRCAKPFAVKGDWR 314
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 2 GTSKTFACNSALEIHYRSHTKERPFKCT--VCERGF 103
G K F C+ L H + H ERP KCT C++ F
Sbjct: 1259 GCKKKFFCHKYLLQHRKVHIDERPLKCTWKGCKKAF 1294
>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
Length = 322
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 640
L LQ H R G + F C C K F +G+ R C +W CGA
Sbjct: 229 LKDFRTLQTHYRRRHGARDFACRRCAKRFAVRGDWRTHEKNCGRLWRCACGA 280
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 640
L LQ H R G +P+ C C K F +G+ R C +W CG+
Sbjct: 260 LKDFRTLQTHYRRKHGARPYACRRCGKRFAVRGDWRTHEKNCGKLWFCVCGS 311
>04_04_0869 - 28883688-28884983
Length = 431
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 234 AQDPRHAPGFDKNVVGAPSSEDGRDQSPERRSPEKLDLKRSPPVHVPP-PMNHTPSI 401
A P APG +V A + +G +P ++ K K P H PP P TP +
Sbjct: 331 APSPAPAPGPASDVPAASPAPEGSSPAPSPKAAGKKKKKGKSPSHSPPAPPADTPDM 387
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 483 LCGVCRK-NFLRRQRYKST*GHTPETSPLDVLSARRHSP 596
+CG C + +R + G PETS +DV S R H P
Sbjct: 1384 VCGACGQLGHMRTNKLCPKYGEDPETSEMDVNSIRSHPP 1422
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +3
Query: 279 GAPSSEDGRD-QSPERRSPEK---LDLKRSPPVHVPPPMNHTP 395
G S DGRD + RRSP + D R+ H PPP+ +P
Sbjct: 70 GGGSRRDGRDMRGSYRRSPFRGYGSDFSRNHQEHPPPPLRRSP 112
>04_04_0791 +
28088237-28088809,28089311-28089430,28089585-28089662,
28089808-28089938,28090390-28090435,28090529-28090636
Length = 351
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 189 ERLRLSGQYEATHANAQDPRHAPGFDKNVVGAPSSEDGRDQSPERRSPEKLDLKRSP 359
E RL+ + EA A+A P + VGAP+ + + RR E+L L+R P
Sbjct: 68 ENRRLA-EAEAASASASAPSKTAARKASRVGAPAPKVTEAELARRREDERLRLEREP 123
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 252 APGFDKNVVGAPSSEDGRDQSPER-RSPEKLDLKRSPPVHVPPPMNHTPSI 401
AP +++ APS Q PE R+P + KR H PPPM P I
Sbjct: 343 APKKGEHLPFAPSYPPSHAQGPENSRAPRQSGAKRQKH-HAPPPMFRGPHI 392
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 276 VGAPSSEDGRDQSPERRSPEKLDLKRSPPVHVPPPMNHTP 395
V +P + PE +SP L + SPP P +HTP
Sbjct: 864 VSSPPPPEKSPPPPETKSPPTLTPEISPPPEGKSPPSHTP 903
>10_08_0502 -
18369491-18369592,18369782-18369906,18370824-18370875,
18372166-18372747
Length = 286
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 246 RHAPGFDKN--VVGAPSSEDGRDQSPERRSPEKLDLKRSPPVHVPPP 380
+H P K VV A E+ +SPE+ SP+K + +R H P P
Sbjct: 27 KHKPDEAKEEMVVDAIPKEEENLKSPEKGSPKKKEKRRHKHKHKPKP 73
>08_02_0213 +
14349821-14350396,14351360-14351610,14351695-14352070,
14352210-14352341,14352425-14352600,14353176-14353299
Length = 544
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 208 GNMKQHMLTHKIRDMPPASIRMSSGRPLARMGGIR 312
G+ H++T ++R + S+ +S PLA + G+R
Sbjct: 26 GSQYTHLITRRVRQLGVLSLCVSGTAPLASLAGLR 60
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 491 GVPQELSSSSALQIHMRTHTGDKPFRCAV--CQKAF 592
G P A H+R HTG++P++C+ C ++F
Sbjct: 853 GCPMTFKWLWAQTEHIRVHTGERPYKCSAPDCGQSF 888
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 2 GTSKTFACNSALEIHYRSHTKERPFKCTVCERGFS 106
G TF A H R HT ERP+KC+ + G S
Sbjct: 853 GCPMTFKWLWAQTEHIRVHTGERPYKCSAPDCGQS 887
>01_06_0102 - 26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 180 GLVERLRLSGQYEATHANAQDPRHAPGFDKNVVGAPSSEDGR--DQSPERRSPEKLDLKR 353
G VE + ++A+A AP D N P+ G+ + +P +PE D
Sbjct: 1228 GNVEGTAAAATDATSNADATSGAPAPAADSNGADPPAVTPGQVTNGAPSTETPETADKPS 1287
Query: 354 SPPVHVPPPMNHTPSI 401
S PP+ + P++
Sbjct: 1288 STEPSPAPPIPNVPAV 1303
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 204 SGQYEATHANAQDPRHAPGFDKNVVGAPSSEDGRDQSPERRSPEKL 341
S + E + + P+H+PG KN +GA + G +S RR E++
Sbjct: 382 SSESEVQLLSNKSPQHSPGLSKNKLGA---KGGIKKSTNRRIAERI 424
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 18 SPATLRSKYIIAATLKNVPSSAPYVNADFPLR 113
S T S IAA+LKN P+SA VN LR
Sbjct: 492 SEDTAESNPFIAASLKNQPTSASPVNVPLNLR 523
>05_03_0502 -
14754532-14754851,14754959-14755042,14755553-14755709,
14756198-14756638,14757590-14757808,14757873-14758193
Length = 513
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 240 DPRHAPGFDKNVVGAPSSEDGRDQSPERRSPE--KLDLKRSPPVHVPPP 380
D HA + VVG S+ G DQ P ++ E +D+ + PPP
Sbjct: 197 DLHHAVFSTRTVVGNHSAVAGADQGPPQQPVEWQPIDIDELTAAYTPPP 245
>05_02_0012 -
5575574-5575849,5575889-5575954,5576103-5576926,
5577333-5577405,5577936-5577983
Length = 428
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 491 GVPQELSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSRCIWALTCG 637
GV Q + + L + +R H F CA+ + A +G RC CG
Sbjct: 104 GVKQR-NQMTLLPLDLRAHLVKFVFFCAIRRAAIRAQGRGRCSGEARCG 151
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 491 GVPQELSSSSALQIHMRTHTGDKPFRC--AVCQKAFTTKGNSR 613
G ++ SS L+ H HTG K F C C KAF+ N R
Sbjct: 122 GCGKKFVDSSKLKRHHLIHTGQKDFICPHPGCGKAFSLDFNLR 164
>02_02_0087 - 6650570-6652021
Length = 483
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 296 GWAGSESRTAVARKTGPETLSACTRATAYEPHTIHRHAAFTETAQCSE 439
G GS ARKT PE L+A A A+ +H E C +
Sbjct: 194 GPGGSRLAAGDARKTTPEALAAAVSAWAFLLTVVHDRYEAEEGESCKD 241
>01_06_0039 +
25857805-25858894,25858997-25859345,25860019-25860104,
25860242-25860399,25861489-25861565,25861656-25861722
Length = 608
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 528 KST*GHTPETSPLDVLSARRHSPRRVTQGAYGHSHVERRRF--SSRSANVS 674
+S+ G TP S D SAR P T GA H E F SS ++ VS
Sbjct: 273 QSSRGPTPRQSNFDEHSARPPKPPATTTGALNHDAKELHMFVWSSSASPVS 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,740,796
Number of Sequences: 37544
Number of extensions: 462789
Number of successful extensions: 1945
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1939
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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