Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00486
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 39 0.003
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 37 0.011
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 35 0.057
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 34 0.075
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 33 0.17
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 32 0.30
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 31 0.70
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 31 0.93
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 30 1.2
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 30 1.6
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 30 1.6
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 30 1.6
At1g04030.1 68414.m00390 expressed protein 30 1.6
At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family... 29 2.1
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 2.1
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 2.8
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 2.8
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 2.8
At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 3.7
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 25 4.2
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 28 4.9
At5g55530.3 68418.m06918 C2 domain-containing protein low simila... 28 6.5
At5g55530.2 68418.m06917 C2 domain-containing protein low simila... 28 6.5
At5g55530.1 68418.m06916 C2 domain-containing protein low simila... 28 6.5
At5g23230.1 68418.m02717 isochorismatase hydrolase family protei... 28 6.5
At5g61060.1 68418.m07662 histone deacetylase family protein simi... 27 8.6
At3g57440.1 68416.m06395 hypothetical protein 27 8.6
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 27 8.6
At2g12320.1 68415.m01329 hypothetical protein 27 8.6
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 640
L LQ H + G KPF C +C KAF KG+ R C +W +CG+
Sbjct: 243 LKDFRTLQTHYKRKHGSKPFACRMCGKAFAVKGDWRTHEKNCGKLWYCSCGS 294
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 35 LEIHYRSHTKERPFKCTVCERGFSTK 112
L+ HY+ +PF C +C + F+ K
Sbjct: 249 LQTHYKRKHGSKPFACRMCGKAFAVK 274
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 640
L LQ H + G KPF C C KA KG+ R C +W TCG+
Sbjct: 246 LKDFRTLQTHYKRKHGSKPFSCGKCGKALAVKGDWRTHEKNCGKLWYCTCGS 297
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 640
L LQ H + G +PF C C KAF KG+ R C +W +CG+
Sbjct: 321 LKDFRTLQTHYKRKHGVRPFACRRCGKAFAVKGDWRTHEKNCGKLWYCSCGS 372
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 34.3 bits (75), Expect = 0.075
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR-----C--IWALTCGA 640
L LQ H + G KPF C C KAF +G+ R C +W CG+
Sbjct: 282 LKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGS 333
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRC-AVCQKAFTTKGNSR-----C--IWALTCGA 640
L LQ H + G KPFRC C+K F +G+ R C +W CG+
Sbjct: 167 LKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDWRTHEKNCGKLWFCVCGS 219
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 506 LSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNSR 613
L LQ H + G KPF C +C K KG+ R
Sbjct: 210 LKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWR 245
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 311 ESRTAVARKTGPETLSACTRATAYE-PHTIHRHAAFTETAQCSEWSATSTTAANIIQAFM 487
E + +A++ +T AC+ + E P T H + + E + + S +
Sbjct: 1184 EEKKPIAKRL-KKTPKACSGSRQQEVPTTTHPNRCYLEGCKMTFESKAKLQTHKRNRCTH 1242
Query: 488 RGVPQELSSSSALQIHMRTHTGDKPFRCA 574
G ++ + L +H R H ++PF C+
Sbjct: 1243 EGCGKKFRAHKYLVLHQRVHKDERPFECS 1271
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 2 GTSKTFACNSALEIHYRSHTKERPFKCT 85
G K F + L +H R H ERPF+C+
Sbjct: 1244 GCGKKFRAHKYLVLHQRVHKDERPFECS 1271
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 2 GTSKTFACNSALEIHYRSHTKERPFKCTVCERGFS 106
G S TF A H R HT ERP+ C V G S
Sbjct: 1274 GCSMTFKWQWARTEHLRLHTGERPYICKVDGCGLS 1308
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 2 GTSKTFACNSALEIHYRSHTKERPFKCTV--CERGFS 106
G K F +S L+ HY HT ER + CT C + FS
Sbjct: 114 GCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFS 150
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 237 QDPRHAPGFDKNVVGAPSSEDGRDQSPERRSPEKLDLKRSPPVHVPPPMNHTPS 398
Q P +P D + + S E QSP SP+ L SP PPP +PS
Sbjct: 105 QPPSSSPEADSPLPPSSSPEANSPQSPAS-SPKPESLADSPSPPPPPPQPESPS 157
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 RGHRPAARHCFGLVERLRLSGQYEATHANAQDPRHAPGFDKNVVGAPSSEDGRDQSPERR 326
RGH R+C ++LR SG Y + ++ PR +++ + S R +SP RR
Sbjct: 88 RGH--IERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSL--SRSRSYSRSRSPVRR 143
Query: 327 SPEKLDLK-RSP 359
++ + RSP
Sbjct: 144 RERSVEERSRSP 155
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 RGHRPAARHCFGLVERLRLSGQYEATHANAQDPRHAPGFDKNVVGAPSSEDGRDQSPERR 326
RGH R+C ++LR SG Y + ++ PR +++ + S R +SP RR
Sbjct: 99 RGH--IERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSL--SRSRSYSRSRSPVRR 154
Query: 327 SPEKLDLK-RSP 359
++ + RSP
Sbjct: 155 RERSVEERSRSP 166
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 RGHRPAARHCFGLVERLRLSGQYEATHANAQDPRHAPGFDKNVVGAPSSEDGRDQSPERR 326
RGH R+C ++LR SG Y + ++ PR +++ + S R +SP RR
Sbjct: 129 RGH--IERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSL--SRSRSYSRSRSPVRR 184
Query: 327 SPEKLDLK-RSP 359
++ + RSP
Sbjct: 185 RERSVEERSRSP 196
>At1g04030.1 68414.m00390 expressed protein
Length = 418
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 383 EPHTIHRHAAFTETAQCSEWSATSTTAANIIQAFMRGV-PQELSSSSALQIHMRTHTGDK 559
EP + R+ A S W +TS + + A M + P++L S+S +R + D+
Sbjct: 268 EPKKL-RNQELAVDASLSTWLSTSESGSECNSASMYTLTPEKLKSTSCYSKPLRINHDDR 326
Query: 560 PFRCAV 577
P CA+
Sbjct: 327 PVLCAL 332
>At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family
protein / DNA photolyase family protein contains Pfam
domain, PF00875: deoxyribodipyrimidine photolyase
Length = 581
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 530 IHMRTHTGDKPFRCAVCQKAFTTKGNSRCIW 622
+H+R D+ RC C + T +G++ +W
Sbjct: 10 LHLRLRRNDRKNRCKCCLSSATNEGSTAVVW 40
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 282 APSSEDGRDQSPERRSPEKLDLKRSPPVHVPPPMNHTP 395
+PS+E+ + SP+ SP PPVH PPP +P
Sbjct: 628 SPSTEETKTTSPQ--SPPVHSPPPPPPVHSPPPPVFSP 663
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 315 PERRSPEKLDLKRSPPVHVPPPMNHTP 395
P P + PPVH PPP H+P
Sbjct: 755 PVHSPPPPVHSPPPPPVHSPPPPVHSP 781
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 276 VGAPSSEDGRDQSPERRSPEKLDLKRSPPVHVPPPMNHT 392
V + + R P S +K L R PP PPPM H+
Sbjct: 663 VASNLGQPARSPPPISNSDKKPALPRPPPPPPPPPMQHS 701
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 13/51 (25%)
Frame = +3
Query: 282 APSSEDGRDQSP--ERRSPEKLDLKRSPP-----------VHVPPPMNHTP 395
+P +D DQSP +RRSP + PP VH PPP H+P
Sbjct: 500 SPQPDDPYDQSPVTKRRSPPPAPVNSPPPPVYSPPPPPPPVHSPPPPVHSP 550
Score = 26.6 bits (56), Expect(2) = 3.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 357 PPVHVPPPMNHTP 395
PPVH PPP H+P
Sbjct: 584 PPVHSPPPPVHSP 596
Score = 23.8 bits (49), Expect(2) = 7.1
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 360 PVHVPPPMNHTP 395
PVH PPP H+P
Sbjct: 601 PVHSPPPPVHSP 612
Score = 22.2 bits (45), Expect(2) = 7.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 357 PPVHVPPP 380
PPVH PPP
Sbjct: 591 PPVHSPPP 598
Score = 20.6 bits (41), Expect(2) = 3.3
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = +3
Query: 315 PERRSPEKLDLKRSPPVHVPPP 380
P P + PPV+ PPP
Sbjct: 539 PVHSPPPPVHSPPPPPVYSPPP 560
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 243 PRHAPGFDKNVVGAPSSEDGRDQSPE--RRSPEKLDLKRSPPVHVPPPMN--HTP 395
P H P K +P D DQSP RRSP PPVH PPP + H+P
Sbjct: 465 PVHKPQPPKE---SPQPNDPYDQSPVKFRRSPPP------PPVHSPPPPSPIHSP 510
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +3
Query: 243 PRHAPGFDKNVVGAPSSEDGRDQSPERRSPEKLDLKRSPPVHVPPPMNHTP 395
P ++P V P P SP PPVH PPP H+P
Sbjct: 523 PVYSPPPPPPVYSPPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSP 573
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +3
Query: 243 PRHAPGFDKNVVGAPSSEDGRDQSPERRSPEKLDLKR-SPPVHVPPPMNHTPSI 401
P AP N V +P E P +P + SPP + PPP PS+
Sbjct: 105 PTEAPP-PANPVSSPPPESSPPPPPPTEAPPTTPITSPSPPTNPPPPPESPPSL 157
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 25.0 bits (52), Expect(2) = 4.2
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Frame = +3
Query: 216 EATHANAQDPRHA-PGFDKNVVGAPSSEDGRDQSPE----RRSPEKLDLKRSPPVHVPPP 380
EA DP A P ++ P ED R P+ SP PPVH PPP
Sbjct: 502 EAQGPTPDDPYDASPVKNRRSPPPPKVEDTRVPPPQPPMPSPSPPSPIYSPPPPVHSPPP 561
Score = 21.8 bits (44), Expect(2) = 4.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 354 SPPVHVPPPMNHTP 395
SPP PPP H+P
Sbjct: 581 SPPPPSPPPPVHSP 594
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = +3
Query: 213 YEATHANAQDPRHAPGFDKNVVGAPSSEDGRDQSPERRSPEKLDLKRSPPVHVPPP 380
+ HA + P H+P +PS QSP SP + + PV P P
Sbjct: 255 HSPAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSPATPSP--MTPQSPSPVSSPSP 308
>At5g55530.3 68418.m06918 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 666 SPTATRSAAAPHVSAHMHLELP 601
S AT AA+PH SAH E P
Sbjct: 275 SSNATNGAASPHASAHSATETP 296
>At5g55530.2 68418.m06917 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 666 SPTATRSAAAPHVSAHMHLELP 601
S AT AA+PH SAH E P
Sbjct: 275 SSNATNGAASPHASAHSATETP 296
>At5g55530.1 68418.m06916 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 666 SPTATRSAAAPHVSAHMHLELP 601
S AT AA+PH SAH E P
Sbjct: 275 SSNATNGAASPHASAHSATETP 296
>At5g23230.1 68418.m02717 isochorismatase hydrolase family protein
low similarity to SP|P45743 Isochorismatase (EC 3.3.2.1)
(2,3 dihydro-2,3 dihydroxybenzoate synthase)
(Superoxide-inducible protein 1) (SOI1) {Bacillus
subtilis}; contains Pfam profile PF00857:
isochorismatase family protein
Length = 198
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Frame = +2
Query: 350 TLSACTRATAYEPHTIHRHAAFTETAQCSEW-----SATSTTAANIIQAFMRGV--PQEL 508
T+ C RA+ T H H + T+ EW TT + II R V P E+
Sbjct: 46 TIDICRRASIPVFFTRHNHKSPTDHGMLGEWWNGDLILDGTTDSEIIPEINRQVTGPDEI 105
Query: 509 SSSSALQIHMRTHTGDK 559
S TH +K
Sbjct: 106 VEKSTYSAFNNTHLQEK 122
>At5g61060.1 68418.m07662 histone deacetylase family protein similar
to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens};
contains Pfam profile PF00850: Histone deacetylase
family
Length = 660
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 615 HLELPFVVNAFWQTAHLKGLSPVCVLMWICNADDE 511
H E P + W+ L G+S CV++ A+D+
Sbjct: 46 HPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDK 80
>At3g57440.1 68416.m06395 hypothetical protein
Length = 240
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 582 WQTAHLKGLSPVCVLMWICNADDEESSC 499
++ HLK ++PVC ++ C+ D ++ SC
Sbjct: 112 FKPTHLK-MNPVCDVLSTCSVDSKDESC 138
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +2
Query: 326 VARKTGPETLSACTRATAYEPHTIHRHAAFTETAQCSEWSATSTTAANIIQAFMRGVPQE 505
++R G ++A R + EP + R + S ST ++I+ +RG+
Sbjct: 515 ISRTDGVVVIAATNRPDSIEP-ALRRPGRLDREIEIGVPS--STQRSDILHIILRGMRHS 571
Query: 506 LSSSSALQIHMRTH 547
LS+ Q+ M TH
Sbjct: 572 LSNIQVEQLAMATH 585
>At2g12320.1 68415.m01329 hypothetical protein
Length = 202
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 469 HHPSIYAGCAARTFFVVSVTNPHEDTHRRQAL*MCCLPEG 588
HH + Y+ + R FF++ T H T +++ L + P G
Sbjct: 98 HHSTAYSMTSFRAFFILHSTR-HSSTRKKRGLQLFTRPHG 136
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,339
Number of Sequences: 28952
Number of extensions: 326742
Number of successful extensions: 1276
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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