Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00485
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   1.9  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   1.9  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   5.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   5.7  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.6  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 330 HADYLKNEASSKSEFLALCKQLGIQGEKIKRE 425
           H D L N  +S     A+CK +G+   +I R+
Sbjct: 14  HHDTLHNIYTSMKPVYAICKLIGLNTLRIGRK 45


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 330 HADYLKNEASSKSEFLALCKQLGIQGEKIKRE 425
           H D L N  +S     A+CK +G+   +I R+
Sbjct: 14  HHDTLHNIYTSMKPVYAICKLIGLNTLRIGRK 45


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 121 ETEADTKNLFGRYGSQRMKDW-QDVERNYEKENLY 222
           ET+ +      R+     +DW  ++E  Y+KE  Y
Sbjct: 80  ETQKNGSKKIMRHLIDHKRDWWNELEEKYDKEGEY 114


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 560  PILQYVIIHGNTTVYEWSYGEPPLSLEPDPIHIELD 667
            P+L +VI H   T  EW      + L  + + ++LD
Sbjct: 1520 PMLYFVIEHKKKTSTEWIQVSNNVKLGQNFVLLDLD 1555


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -3

Query: 333 HASFQNPLVPVPLWQSASSTLESHN*FPDQHLCCLC 226
           H S  +P    P   S S    +H     +HLC +C
Sbjct: 54  HGSLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSIC 89


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 234 STDAGQEISYEIPGLKRQIAKEEQAQADFEKKH 332
           S  A Q +  + PG  + + K+E  Q D E  +
Sbjct: 172 SPKACQFLYNQFPGSSQVVVKDETCQYDTESSY 204


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 234 STDAGQEISYEIPGLKRQIAKEEQAQADFEKKH 332
           S  A Q +  + PG  + + K+E  Q D E  +
Sbjct: 192 SPKACQFLYNQFPGSSQVVVKDETCQYDTESSY 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,482
Number of Sequences: 336
Number of extensions: 3437
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)